Variant report

Variant	rs73286892
Chromosome Location	chr12:25339590-25339591
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:25339080..25340582-chr12:25340786..25343717,2	MCF-7	breast:
2	chr12:25339039..25341718-chr12:25343903..25345457,2	K562	blood:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs16928546	0.92[AFR][1000 genomes]
rs16928548	0.95[AFR][1000 genomes]
rs16928568	0.95[AFR][1000 genomes]
rs56706074	1.00[AFR][1000 genomes]
rs59092193	0.95[AFR][1000 genomes]
rs61158742	1.00[AFR][1000 genomes]
rs61401861	1.00[AFR][1000 genomes]
rs61732541	1.00[AFR][1000 genomes]
rs61759628	0.95[AFR][1000 genomes]
rs61761095	0.95[AFR][1000 genomes]
rs61761153	0.95[AFR][1000 genomes]
rs61762419	0.90[AFR][1000 genomes]
rs61762425	1.00[AFR][1000 genomes]
rs61763585	1.00[AFR][1000 genomes]
rs73286885	1.00[AFR][1000 genomes]
rs73286888	1.00[AFR][1000 genomes]
rs73288812	0.95[AFR][1000 genomes]
rs73288817	1.00[AFR][1000 genomes]
rs73288818	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv469169	chr12:24692383-25357680	Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv557775	chr12:24692383-25357680	Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	nsv932477	chr12:24705151-25346677	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
4	nsv1067577	chr12:24791283-25346677	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
5	nsv529514	chr12:24791283-25346677	Enhancers Weak transcription Strong transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
6	nsv515612	chr12:25272027-25341177	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
7	nsv557797	chr12:25272027-25341177	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
8	nsv898922	chr12:25274593-25408047	Genic enhancers Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:25338800-25339600	Enhancers	Primary T killer memory cells from peripheral blood	blood
2	chr12:25339200-25339600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
3	chr12:25339400-25339600	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
4	chr12:25339400-25339600	Enhancers	Primary T helper cells fromperipheralblood	blood
5	chr12:25339400-25339600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
6	chr12:25339400-25339600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
7	chr12:25339400-25339600	Enhancers	Hela-S3	cervix
8	chr12:25339400-25339800	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
9	chr12:25339400-25339800	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
10	chr12:25339400-25339800	Enhancers	HMEC	breast
11	chr12:25339400-25339800	Enhancers	NHEK	skin
12	chr12:25339400-25340000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
13	chr12:25339400-25340200	Flanking Active TSS	Primary T cells from cord blood	blood
14	chr12:25339400-25340200	Enhancers	Small Intestine	intestine
15	chr12:25339400-25340200	Flanking Active TSS	GM12878-XiMat	blood
16	chr12:25339400-25340200	Enhancers	HepG2	liver
17	chr12:25339400-25340400	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
18	chr12:25339400-25340400	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
19	chr12:25339400-25340400	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
20	chr12:25339400-25340400	Active TSS	Pancreatic Islets	Pancreatic Islet

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