Variant report

Variant	rs73287458
Chromosome Location	chr17:16208185-16208186
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:16188816..16189363-chr17:16208174..16208744,2	K562	blood:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs73280268	1.00[AMR][1000 genomes]
rs73280269	1.00[AMR][1000 genomes]
rs73281934	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv934185	chr17:15552960-16551197	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	190 gene(s)	inside rSNPs	diseases
2	esv3330182	chr17:15652014-16569534	Strong transcription Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	177 gene(s)	inside rSNPs	diseases
3	esv3446844	chr17:15654843-16572246	Enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	177 gene(s)	inside rSNPs	diseases
4	nsv1063459	chr17:15804228-16543593	Weak transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	164 gene(s)	inside rSNPs	diseases
5	nsv907717	chr17:16076898-16239832	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	44 gene(s)	inside rSNPs	diseases
6	esv3326983	chr17:16138963-16210147	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	21 gene(s)	inside rSNPs	diseases
7	nsv1063764	chr17:16171649-16662914	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	120 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:16189400-16216600	Weak transcription	Fetal Brain Female	brain
2	chr17:16190600-16229600	Weak transcription	Brain Cingulate Gyrus	brain
3	chr17:16190800-16216400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr17:16190800-16220800	Weak transcription	Aorta	Aorta
5	chr17:16191400-16218400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr17:16191400-16219400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr17:16191400-16226000	Weak transcription	HSMMtube	muscle
8	chr17:16191600-16216800	Weak transcription	Fetal Kidney	kidney
9	chr17:16191800-16217200	Weak transcription	HSMM	muscle
10	chr17:16192800-16229000	Weak transcription	Monocytes-CD14+_RO01746	blood
11	chr17:16194000-16216400	Weak transcription	GM12878-XiMat	blood
12	chr17:16197800-16230000	Weak transcription	Brain Angular Gyrus	brain
13	chr17:16198400-16220400	Weak transcription	Cortex derived primary cultured neurospheres	brain
14	chr17:16200800-16216600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr17:16200800-16216600	Weak transcription	Primary hematopoietic stem cells	blood
16	chr17:16200800-16228200	Weak transcription	Primary monocytes fromperipheralblood	blood
17	chr17:16201000-16232400	Weak transcription	Hela-S3	cervix
18	chr17:16201200-16213600	Weak transcription	HUES6 Cell Line	embryonic stem cell
19	chr17:16201200-16214000	Weak transcription	H1 Cell Line	embryonic stem cell
20	chr17:16201200-16214200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr17:16201200-16223200	Weak transcription	H9 Cell Line	embryonic stem cell
22	chr17:16201400-16214000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
23	chr17:16201400-16216200	Weak transcription	HUES48 Cell Line	embryonic stem cell
24	chr17:16201600-16228800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
25	chr17:16201600-16246400	Weak transcription	Fetal Brain Male	brain
26	chr17:16201800-16221000	Weak transcription	Colonic Mucosa	Colon
27	chr17:16202000-16214000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
28	chr17:16202000-16214200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
29	chr17:16202000-16214200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
30	chr17:16202000-16214200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
31	chr17:16202200-16214000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
32	chr17:16202200-16214200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
33	chr17:16202200-16216400	Weak transcription	K562	blood
34	chr17:16202200-16216600	Weak transcription	Pancreas	Pancrea
35	chr17:16203000-16210800	Strong transcription	Fetal Muscle Leg	muscle
36	chr17:16203000-16211000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
37	chr17:16203200-16210800	Strong transcription	Primary T cells from cord blood	blood
38	chr17:16203200-16213200	Strong transcription	Fetal Stomach	stomach
39	chr17:16203600-16210200	Weak transcription	Stomach Mucosa	stomach
40	chr17:16203600-16214000	Weak transcription	Primary T helper cells PMA-I stimulated	--
41	chr17:16203600-16214200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
42	chr17:16203600-16228800	Weak transcription	Primary B cells from cord blood	blood
43	chr17:16203800-16216400	Weak transcription	Rectal Mucosa Donor 31	rectum
44	chr17:16203800-16216600	Weak transcription	Small Intestine	intestine
45	chr17:16204000-16219400	Weak transcription	Brain Germinal Matrix	brain
46	chr17:16204200-16220000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr17:16204200-16228800	Weak transcription	Brain Substantia Nigra	brain
48	chr17:16204400-16215400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
49	chr17:16204600-16226000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chr17:16205400-16228800	Weak transcription	Colon Smooth Muscle	Colon

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