Variant report

Variant	rs73281934
Chromosome Location	chr17:16132520-16132521
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:16128076..16130079-chr17:16132114..16135046,2	K562	blood:
2	chr17:16131263..16133081-chr17:16135992..16138257,2	K562	blood:

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs1006958	1.00[EUR][1000 genomes]
rs57100283	1.00[EUR][1000 genomes]
rs57540884	1.00[EUR][1000 genomes]
rs57939654	1.00[EUR][1000 genomes]
rs57958152	1.00[EUR][1000 genomes]
rs58069228	1.00[EUR][1000 genomes]
rs58203269	1.00[EUR][1000 genomes]
rs58213352	1.00[EUR][1000 genomes]
rs58937503	1.00[EUR][1000 genomes]
rs59191673	1.00[EUR][1000 genomes]
rs59414015	1.00[EUR][1000 genomes]
rs59837344	1.00[EUR][1000 genomes]
rs60277322	1.00[EUR][1000 genomes]
rs60436356	1.00[EUR][1000 genomes]
rs61360753	1.00[EUR][1000 genomes]
rs61479315	1.00[EUR][1000 genomes]
rs61529373	1.00[EUR][1000 genomes]
rs7212903	1.00[EUR][1000 genomes]
rs7217230	1.00[EUR][1000 genomes]
rs7219038	1.00[EUR][1000 genomes]
rs7225649	1.00[EUR][1000 genomes]
rs73280268	1.00[AMR][1000 genomes]
rs73280269	1.00[AMR][1000 genomes]
rs73281961	1.00[EUR][1000 genomes]
rs73281967	1.00[EUR][1000 genomes]
rs73281977	1.00[EUR][1000 genomes]
rs73281979	1.00[EUR][1000 genomes]
rs73281980	1.00[EUR][1000 genomes]
rs73281981	1.00[EUR][1000 genomes]
rs73287023	1.00[EUR][1000 genomes]
rs73287032	1.00[EUR][1000 genomes]
rs73287067	1.00[EUR][1000 genomes]
rs73287076	1.00[EUR][1000 genomes]
rs73287082	1.00[EUR][1000 genomes]
rs73287088	1.00[EUR][1000 genomes]
rs73287090	1.00[EUR][1000 genomes]
rs73287414	1.00[EUR][1000 genomes]
rs73287419	1.00[EUR][1000 genomes]
rs73287423	1.00[EUR][1000 genomes]
rs73287425	1.00[EUR][1000 genomes]
rs73287426	1.00[EUR][1000 genomes]
rs73287441	1.00[EUR][1000 genomes]
rs73287458	1.00[AMR][1000 genomes]
rs8066726	1.00[EUR][1000 genomes]
rs8067000	1.00[EUR][1000 genomes]
rs8068254	1.00[EUR][1000 genomes]
rs8069679	1.00[EUR][1000 genomes]
rs8071289	1.00[EUR][1000 genomes]
rs8075170	1.00[EUR][1000 genomes]
rs8079037	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv934185	chr17:15552960-16551197	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	190 gene(s)	inside rSNPs	diseases
2	esv3330182	chr17:15652014-16569534	Strong transcription Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	177 gene(s)	inside rSNPs	diseases
3	esv3446844	chr17:15654843-16572246	Enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	177 gene(s)	inside rSNPs	diseases
4	nsv1063459	chr17:15804228-16543593	Weak transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	164 gene(s)	inside rSNPs	diseases
5	nsv522169	chr17:15923709-16147821	Strong transcription Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
6	nsv907715	chr17:16019978-16206540	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	44 gene(s)	inside rSNPs	diseases
7	nsv907717	chr17:16076898-16239832	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	44 gene(s)	inside rSNPs	diseases
8	nsv907718	chr17:16080849-16143709	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
9	nsv528263	chr17:16097430-16196996	Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:93 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:16121000-16163200	Weak transcription	Spleen	Spleen
2	chr17:16121200-16141400	Weak transcription	Brain Substantia Nigra	brain
3	chr17:16121200-16142800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr17:16121200-16157000	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr17:16121200-16158800	Weak transcription	Left Ventricle	heart
6	chr17:16121200-16159800	Weak transcription	Lung	lung
7	chr17:16121200-16163000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr17:16121400-16133000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
9	chr17:16121400-16133200	Weak transcription	Fetal Thymus	thymus
10	chr17:16121400-16137400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
11	chr17:16121400-16140200	Weak transcription	Brain Cingulate Gyrus	brain
12	chr17:16121400-16140400	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr17:16121400-16141400	Weak transcription	Colon Smooth Muscle	Colon
14	chr17:16121400-16158600	Weak transcription	Stomach Smooth Muscle	stomach
15	chr17:16121400-16158800	Weak transcription	Fetal Muscle Leg	muscle
16	chr17:16121400-16159000	Weak transcription	Fetal Muscle Trunk	muscle
17	chr17:16121400-16170600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
18	chr17:16121600-16132800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
19	chr17:16121600-16137000	Weak transcription	HUES48 Cell Line	embryonic stem cell
20	chr17:16121600-16137600	Weak transcription	H1 Cell Line	embryonic stem cell
21	chr17:16121600-16139200	Weak transcription	Monocytes-CD14+_RO01746	blood
22	chr17:16121600-16139400	Weak transcription	Brain Inferior Temporal Lobe	brain
23	chr17:16121600-16143000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr17:16121600-16143000	Weak transcription	Fetal Lung	lung
25	chr17:16121600-16147000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
26	chr17:16121600-16150200	Weak transcription	Rectal Mucosa Donor 31	rectum
27	chr17:16121600-16151800	Weak transcription	Duodenum Smooth Muscle	Duodenum
28	chr17:16121600-16158400	Weak transcription	Brain Hippocampus Middle	brain
29	chr17:16121600-16158600	Weak transcription	Brain Germinal Matrix	brain
30	chr17:16121800-16132600	Weak transcription	HUVEC	blood vessel
31	chr17:16121800-16132800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
32	chr17:16121800-16132800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
33	chr17:16121800-16132800	Weak transcription	NH-A	brain
34	chr17:16121800-16132800	Weak transcription	Osteobl	bone
35	chr17:16121800-16134000	Weak transcription	Fetal Intestine Large	intestine
36	chr17:16121800-16134200	Weak transcription	Fetal Kidney	kidney
37	chr17:16121800-16137000	Weak transcription	HMEC	breast
38	chr17:16121800-16139000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
39	chr17:16121800-16139200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr17:16121800-16146600	Weak transcription	HUES6 Cell Line	embryonic stem cell
41	chr17:16121800-16150200	Weak transcription	Rectal Mucosa Donor 29	rectum
42	chr17:16121800-16153600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
43	chr17:16121800-16158200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
44	chr17:16121800-16158400	Weak transcription	Skeletal Muscle Male	skeletal muscle
45	chr17:16121800-16163200	Weak transcription	Primary hematopoietic stem cells	blood
46	chr17:16121800-16163200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr17:16122000-16137200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
48	chr17:16122000-16163400	Weak transcription	Fetal Brain Female	brain
49	chr17:16122200-16134600	Weak transcription	Duodenum Mucosa	Duodenum
50	chr17:16122200-16146800	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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