Variant report

Variant	rs58203269
Chromosome Location	chr17:16206189-16206190
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:16201566..16203146-chr17:16204706..16207584,2	K562	blood:
2	chr17:16195928..16197908-chr17:16204367..16207152,2	MCF-7	breast:

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs1006958	1.00[EUR][1000 genomes]
rs57100283	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57540884	1.00[EUR][1000 genomes]
rs57939654	1.00[EUR][1000 genomes]
rs57958152	1.00[EUR][1000 genomes]
rs58069228	1.00[EUR][1000 genomes]
rs58213352	1.00[EUR][1000 genomes]
rs58937503	1.00[EUR][1000 genomes]
rs59191673	1.00[EUR][1000 genomes]
rs59414015	1.00[EUR][1000 genomes]
rs59837344	1.00[EUR][1000 genomes]
rs60277322	1.00[EUR][1000 genomes]
rs60436356	1.00[EUR][1000 genomes]
rs61360753	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61479315	1.00[EUR][1000 genomes]
rs61529373	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7212903	1.00[EUR][1000 genomes]
rs7217230	1.00[EUR][1000 genomes]
rs7219038	1.00[EUR][1000 genomes]
rs7225649	1.00[EUR][1000 genomes]
rs73281934	1.00[EUR][1000 genomes]
rs73281961	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73281967	1.00[EUR][1000 genomes]
rs73281977	1.00[EUR][1000 genomes]
rs73281979	1.00[EUR][1000 genomes]
rs73281980	1.00[EUR][1000 genomes]
rs73281981	1.00[EUR][1000 genomes]
rs73287023	1.00[EUR][1000 genomes]
rs73287032	1.00[EUR][1000 genomes]
rs73287067	1.00[EUR][1000 genomes]
rs73287076	1.00[EUR][1000 genomes]
rs73287082	1.00[EUR][1000 genomes]
rs73287088	1.00[EUR][1000 genomes]
rs73287090	1.00[EUR][1000 genomes]
rs73287414	1.00[EUR][1000 genomes]
rs73287419	1.00[EUR][1000 genomes]
rs73287423	1.00[EUR][1000 genomes]
rs73287425	1.00[EUR][1000 genomes]
rs73287426	1.00[EUR][1000 genomes]
rs73287441	1.00[EUR][1000 genomes]
rs73288903	1.00[EUR][1000 genomes]
rs73288904	1.00[EUR][1000 genomes]
rs8066726	1.00[EUR][1000 genomes]
rs8067000	1.00[EUR][1000 genomes]
rs8068254	1.00[EUR][1000 genomes]
rs8069679	1.00[EUR][1000 genomes]
rs8071289	1.00[EUR][1000 genomes]
rs8075170	1.00[EUR][1000 genomes]
rs8079037	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv934185	chr17:15552960-16551197	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	190 gene(s)	inside rSNPs	diseases
2	esv3330182	chr17:15652014-16569534	Strong transcription Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	177 gene(s)	inside rSNPs	diseases
3	esv3446844	chr17:15654843-16572246	Enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	177 gene(s)	inside rSNPs	diseases
4	nsv1063459	chr17:15804228-16543593	Weak transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	164 gene(s)	inside rSNPs	diseases
5	nsv907715	chr17:16019978-16206540	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	44 gene(s)	inside rSNPs	diseases
6	nsv907717	chr17:16076898-16239832	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	44 gene(s)	inside rSNPs	diseases
7	esv3326983	chr17:16138963-16210147	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	21 gene(s)	inside rSNPs	diseases
8	nsv1063764	chr17:16171649-16662914	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	120 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:16189400-16216600	Weak transcription	Fetal Brain Female	brain
2	chr17:16190600-16229600	Weak transcription	Brain Cingulate Gyrus	brain
3	chr17:16190800-16216400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr17:16190800-16220800	Weak transcription	Aorta	Aorta
5	chr17:16191400-16218400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr17:16191400-16219400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr17:16191400-16226000	Weak transcription	HSMMtube	muscle
8	chr17:16191600-16216800	Weak transcription	Fetal Kidney	kidney
9	chr17:16191800-16217200	Weak transcription	HSMM	muscle
10	chr17:16192800-16229000	Weak transcription	Monocytes-CD14+_RO01746	blood
11	chr17:16194000-16216400	Weak transcription	GM12878-XiMat	blood
12	chr17:16197800-16230000	Weak transcription	Brain Angular Gyrus	brain
13	chr17:16198200-16207400	Weak transcription	Gastric	stomach
14	chr17:16198400-16220400	Weak transcription	Cortex derived primary cultured neurospheres	brain
15	chr17:16200800-16216600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr17:16200800-16216600	Weak transcription	Primary hematopoietic stem cells	blood
17	chr17:16200800-16228200	Weak transcription	Primary monocytes fromperipheralblood	blood
18	chr17:16201000-16232400	Weak transcription	Hela-S3	cervix
19	chr17:16201200-16213600	Weak transcription	HUES6 Cell Line	embryonic stem cell
20	chr17:16201200-16214000	Weak transcription	H1 Cell Line	embryonic stem cell
21	chr17:16201200-16214200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr17:16201200-16223200	Weak transcription	H9 Cell Line	embryonic stem cell
23	chr17:16201400-16214000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
24	chr17:16201400-16216200	Weak transcription	HUES48 Cell Line	embryonic stem cell
25	chr17:16201600-16207400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr17:16201600-16228800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
27	chr17:16201600-16246400	Weak transcription	Fetal Brain Male	brain
28	chr17:16201800-16221000	Weak transcription	Colonic Mucosa	Colon
29	chr17:16202000-16208000	Weak transcription	Thymus	Thymus
30	chr17:16202000-16214000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
31	chr17:16202000-16214200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
32	chr17:16202000-16214200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
33	chr17:16202000-16214200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
34	chr17:16202200-16214000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
35	chr17:16202200-16214200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
36	chr17:16202200-16216400	Weak transcription	K562	blood
37	chr17:16202200-16216600	Weak transcription	Pancreas	Pancrea
38	chr17:16203000-16206400	Strong transcription	Stomach Smooth Muscle	stomach
39	chr17:16203000-16206600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr17:16203000-16206600	Strong transcription	Duodenum Smooth Muscle	Duodenum
41	chr17:16203000-16208000	Strong transcription	Primary T cells fromperipheralblood	blood
42	chr17:16203000-16210800	Strong transcription	Fetal Muscle Leg	muscle
43	chr17:16203000-16211000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
44	chr17:16203200-16206200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
45	chr17:16203200-16206800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
46	chr17:16203200-16208000	Strong transcription	Fetal Muscle Trunk	muscle
47	chr17:16203200-16210800	Strong transcription	Primary T cells from cord blood	blood
48	chr17:16203200-16213200	Strong transcription	Fetal Stomach	stomach
49	chr17:16203600-16210200	Weak transcription	Stomach Mucosa	stomach
50	chr17:16203600-16214000	Weak transcription	Primary T helper cells PMA-I stimulated	--

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