Variant report

Variant	rs73289949
Chromosome Location	chr7:16117852-16117853
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10452774	0.91[AFR][1000 genomes]
rs57367584	0.91[AFR][1000 genomes]
rs58468591	0.91[AFR][1000 genomes]
rs73289907	0.82[AFR][1000 genomes]
rs73289925	0.82[AFR][1000 genomes]
rs73289946	1.00[AFR][1000 genomes]
rs73289947	1.00[AFR][1000 genomes]
rs73289954	0.91[AFR][1000 genomes]
rs73289967	0.91[AFR][1000 genomes]
rs73289968	0.82[AFR][1000 genomes]
rs73291411	0.91[AFR][1000 genomes]
rs73291836	0.82[AFR][1000 genomes]
rs73291837	0.82[AFR][1000 genomes]
rs73291846	0.82[AFR][1000 genomes]
rs73291853	0.91[AFR][1000 genomes]
rs73291855	0.91[AFR][1000 genomes]
rs73291856	0.91[AFR][1000 genomes]
rs73291859	0.91[AFR][1000 genomes]
rs73291880	0.91[AFR][1000 genomes]
rs73291882	0.91[AFR][1000 genomes]
rs73291891	0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016642	chr7:15884061-16799788	Genic enhancers Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv949309	chr7:15986709-16236162	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv949555	chr7:16078412-16279290	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:16117000-16118000	Enhancers	Fetal Stomach	stomach
2	chr7:16117200-16118200	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr7:16117200-16126400	Weak transcription	Aorta	Aorta
4	chr7:16117600-16118200	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr7:16117600-16118200	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr7:16117600-16118200	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr7:16117600-16118200	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr7:16117600-16118200	Enhancers	Brain Hippocampus Middle	brain
9	chr7:16117600-16118400	Enhancers	HUVEC	blood vessel
10	chr7:16117800-16118200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr7:16117800-16118200	Enhancers	Primary hematopoietic stem cells	blood
12	chr7:16117800-16118200	Enhancers	Liver	Liver
13	chr7:16117800-16118200	Enhancers	Stomach Mucosa	stomach
14	chr7:16117800-16118200	Enhancers	K562	blood
15	chr7:16117800-16118400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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