Variant report

Variant	rs73291411
Chromosome Location	chr7:16234700-16234701
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10452774	1.00[AFR][1000 genomes]
rs57367584	1.00[AFR][1000 genomes]
rs58468591	1.00[AFR][1000 genomes]
rs59899265	0.83[AFR][1000 genomes]
rs73289907	0.91[AFR][1000 genomes]
rs73289925	0.91[AFR][1000 genomes]
rs73289946	0.91[AFR][1000 genomes]
rs73289947	0.91[AFR][1000 genomes]
rs73289949	0.91[AFR][1000 genomes]
rs73289954	1.00[AFR][1000 genomes]
rs73289967	1.00[AFR][1000 genomes]
rs73289968	0.91[AFR][1000 genomes]
rs73291476	0.81[AFR][1000 genomes]
rs73291836	0.91[AFR][1000 genomes]
rs73291837	0.91[AFR][1000 genomes]
rs73291846	0.91[AFR][1000 genomes]
rs73291853	1.00[AFR][1000 genomes]
rs73291855	1.00[AFR][1000 genomes]
rs73291856	1.00[AFR][1000 genomes]
rs73291859	1.00[AFR][1000 genomes]
rs73291880	1.00[AFR][1000 genomes]
rs73291882	1.00[AFR][1000 genomes]
rs73291891	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016642	chr7:15884061-16799788	Genic enhancers Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv949309	chr7:15986709-16236162	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv949555	chr7:16078412-16279290	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv1035015	chr7:16144928-16273061	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	esv1847175	chr7:16155335-16272661	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv948950	chr7:16168925-16395434	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
7	nsv887738	chr7:16211553-16284139	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
8	nsv887739	chr7:16216494-16284139	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
9	nsv887740	chr7:16216494-16286261	ZNF genes & repeats Active TSS Weak transcription Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
10	nsv887741	chr7:16216494-16300179	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:16234000-16235000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr7:16234000-16235000	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr7:16234000-16236200	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr7:16234000-16238400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr7:16234400-16238400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr7:16234400-16238600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr7:16234600-16234800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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