Variant report

Variant	rs7329205
Chromosome Location	chr13:50535549-50535550
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs56794415	0.84[AFR][1000 genomes]
rs58364236	0.87[AFR][1000 genomes]
rs7330228	0.84[AFR][1000 genomes]
rs7992306	0.90[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1834429	chr13:50509784-50536186	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1035151	chr13:50513535-51167850	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1254 gene(s)	inside rSNPs	diseases
3	nsv561630	chr13:50525141-50545402	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:50511400-50537800	Weak transcription	Left Ventricle	heart
2	chr13:50522400-50550600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr13:50529400-50547000	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr13:50529600-50537000	Weak transcription	Psoas Muscle	Psoas
5	chr13:50529600-50550000	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr13:50529800-50536600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr13:50529800-50539400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr13:50529800-50543200	Weak transcription	Osteobl	bone
9	chr13:50529800-50544800	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr13:50530000-50536400	Weak transcription	Placenta	Placenta
11	chr13:50530000-50546600	Weak transcription	Fetal Thymus	thymus
12	chr13:50530400-50537200	Weak transcription	Primary neutrophils fromperipheralblood	blood
13	chr13:50531400-50536000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr13:50531400-50550400	Weak transcription	NHDF-Ad	bronchial
15	chr13:50532400-50537600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr13:50532600-50535800	Weak transcription	Primary B cells from cord blood	blood
17	chr13:50532800-50537400	Weak transcription	Brain Substantia Nigra	brain
18	chr13:50533000-50552200	Weak transcription	Ovary	ovary
19	chr13:50533600-50539600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr13:50534000-50536600	Weak transcription	Monocytes-CD14+_RO01746	blood
21	chr13:50534400-50550400	Weak transcription	HSMM	muscle
22	chr13:50534800-50536400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr13:50535200-50537600	Weak transcription	Liver	Liver

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