Variant report

Variant	rs73293117
Chromosome Location	chr8:90817344-90817345
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Variant related genes	Relation type
ENSG00000104325	Chromatin interaction
ENSG00000164823	Chromatin interaction
ENSG00000104312	Chromatin interaction
ENSG00000104320	Chromatin interaction
ENSG00000251136	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs12679456	0.81[ASN][1000 genomes]
rs16893139	0.85[EUR][1000 genomes]
rs39513	0.83[ASN][1000 genomes]
rs73294832	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73294838	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933502	chr8:90702392-91049100	Weak transcription Enhancers Active TSS Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	62 gene(s)	inside rSNPs	diseases
2	nsv934114	chr8:90720182-90999106	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	58 gene(s)	inside rSNPs	diseases
3	nsv891181	chr8:90737258-90819998	Strong transcription Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
4	nsv891182	chr8:90785685-90888786	Flanking Active TSS Genic enhancers Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:90783800-90829000	Weak transcription	Aorta	Aorta
2	chr8:90814000-90817800	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr8:90814000-90824600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr8:90814600-90823400	Weak transcription	NHDF-Ad	bronchial
5	chr8:90815800-90819800	Enhancers	Placenta	Placenta
6	chr8:90816200-90818000	Enhancers	Placenta Amnion	Placenta Amnion
7	chr8:90816600-90818600	Enhancers	HUVEC	blood vessel
8	chr8:90816800-90817400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr8:90817000-90817600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr8:90817000-90817600	Enhancers	Pancreas	Pancrea
11	chr8:90817000-90817600	Enhancers	Stomach Mucosa	stomach
12	chr8:90817000-90817600	Enhancers	NH-A	brain
13	chr8:90817000-90817800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr8:90817000-90817800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
15	chr8:90817000-90818000	Enhancers	Osteobl	bone
16	chr8:90817000-90818600	Enhancers	A549	lung
17	chr8:90817000-90818600	Enhancers	HepG2	liver

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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