Variant report

Variant	rs12679456
Chromosome Location	chr8:90827701-90827702
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs12547410	1.00[CEU][hapmap]
rs12549920	1.00[CEU][hapmap]
rs12676583	0.80[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs12679488	1.00[CEU][hapmap];0.83[JPT][hapmap]
rs12682082	1.00[CEU][hapmap];0.83[JPT][hapmap]
rs16901218	1.00[CEU][hapmap]
rs16901236	1.00[CEU][hapmap]
rs16901239	1.00[CEU][hapmap]
rs73293117	0.81[ASN][1000 genomes]
rs73294832	0.84[ASN][1000 genomes]
rs73294838	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933502	chr8:90702392-91049100	Weak transcription Enhancers Active TSS Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	62 gene(s)	inside rSNPs	diseases
2	nsv934114	chr8:90720182-90999106	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	58 gene(s)	inside rSNPs	diseases
3	nsv891182	chr8:90785685-90888786	Flanking Active TSS Genic enhancers Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv972243	chr8:90823430-90834708	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	n/a
5	nsv520356	chr8:90823687-90857989	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:90783800-90829000	Weak transcription	Aorta	Aorta
2	chr8:90824000-90836600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr8:90825400-90829400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr8:90825600-90829000	Weak transcription	NH-A	brain
5	chr8:90825800-90829000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr8:90826000-90828800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr8:90826200-90828800	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr8:90826800-90829200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr8:90827000-90827800	Enhancers	HMEC	breast
10	chr8:90827000-90828000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr8:90827000-90828200	Enhancers	Osteobl	bone
12	chr8:90827200-90828000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
13	chr8:90827200-90828000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr8:90827200-90828000	Enhancers	NHDF-Ad	bronchial
15	chr8:90827200-90828000	Enhancers	NHEK	skin
16	chr8:90827600-90827800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr8:90827600-90827800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr8:90827600-90828000	Enhancers	Primary hematopoietic stem cells short term culture	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links