Variant report

Variant	rs73295380
Chromosome Location	chr8:107059533-107059534
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:107047054..107052420-chr8:107054763..107060033,4	K562	blood:
2	chr8:107059219..107060866-chr8:107093801..107095788,2	K562	blood:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs59917525	1.00[AFR][1000 genomes]
rs73293454	0.84[AFR][1000 genomes]
rs73295309	0.85[AFR][1000 genomes]
rs73295362	1.00[AFR][1000 genomes]
rs73297403	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021369	chr8:106493317-107243322	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv611840	chr8:106913294-107265915	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv611841	chr8:107048059-107090500	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:107052200-107069200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr8:107056400-107060800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr8:107057000-107060600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr8:107057200-107059800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr8:107057200-107060600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr8:107057200-107060800	Enhancers	NHDF-Ad	bronchial
7	chr8:107057200-107060800	Enhancers	Osteobl	bone
8	chr8:107057400-107060000	Enhancers	Hela-S3	cervix
9	chr8:107057800-107060000	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr8:107058000-107059600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr8:107058000-107060400	Enhancers	NHLF	lung
12	chr8:107058000-107060800	Enhancers	Muscle Satellite Cultured Cells	--
13	chr8:107058200-107060400	Enhancers	HUES64 Cell Line	embryonic stem cell
14	chr8:107058600-107059600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr8:107058600-107060200	Enhancers	HUVEC	blood vessel
16	chr8:107058600-107060400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr8:107058600-107067400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
18	chr8:107058800-107060200	Weak transcription	Fetal Kidney	kidney
19	chr8:107058800-107060200	Enhancers	Pancreatic Islets	Pancreatic Islet
20	chr8:107058800-107060600	Enhancers	A549	lung
21	chr8:107059200-107059600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
22	chr8:107059200-107072000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
23	chr8:107059400-107059600	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr8:107059400-107059800	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr8:107059400-107059800	Flanking Active TSS	HMEC	breast
26	chr8:107059400-107059800	Flanking Active TSS	NH-A	brain
27	chr8:107059400-107059800	Flanking Active TSS	NHEK	skin
28	chr8:107059400-107060200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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