Variant report
| Variant | rs73295309 |
|---|---|
| Chromosome Location | chr8:106986769-106986770 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:4)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:4 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr8:106986050..106989010-chr8:106989686..106992427,4 | K562 | blood: | |
| 2 | chr8:106986736..106988915-chr8:106996043..106998208,2 | K562 | blood: | |
| 3 | chr8:106986764..106989542-chr8:106992843..106995751,2 | K562 | blood: | |
| 4 | chr8:106985533..106989678-chr8:107012423..107017669,5 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:18)
| rs_ID | r2[population] |
|---|---|
| rs57947369 | 0.86[AFR][1000 genomes] |
| rs59917525 | 0.85[AFR][1000 genomes] |
| rs73293451 | 0.86[AFR][1000 genomes] |
| rs73293457 | 0.86[AFR][1000 genomes] |
| rs73293460 | 0.86[AFR][1000 genomes] |
| rs73293467 | 0.86[AFR][1000 genomes] |
| rs73293470 | 0.86[AFR][1000 genomes] |
| rs73293472 | 0.86[AFR][1000 genomes] |
| rs73293474 | 0.86[AFR][1000 genomes] |
| rs73293482 | 0.86[AFR][1000 genomes] |
| rs73293502 | 0.86[AFR][1000 genomes] |
| rs73295329 | 0.86[AFR][1000 genomes] |
| rs73295330 | 0.86[AFR][1000 genomes] |
| rs73295332 | 0.86[AFR][1000 genomes] |
| rs73295338 | 0.86[AFR][1000 genomes] |
| rs73295362 | 0.85[AFR][1000 genomes] |
| rs73295380 | 0.85[AFR][1000 genomes] |
| rs73297403 | 0.85[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1021369 | chr8:106493317-107243322 | Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 13 gene(s) | inside rSNPs | diseases |
| 2 | nsv611840 | chr8:106913294-107265915 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr8:106986200-106987600 | Enhancers | Brain Germinal Matrix | brain |
