Variant report
| Variant | rs73293502 |
|---|---|
| Chromosome Location | chr8:106974515-106974516 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:3)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:3 , 50 per page) page:
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| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000251003 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:11)
| rs_ID | r2[population] |
|---|---|
| rs57947369 | 1.00[AFR][1000 genomes] |
| rs73293451 | 1.00[AFR][1000 genomes] |
| rs73293454 | 0.85[AFR][1000 genomes] |
| rs73293457 | 1.00[AFR][1000 genomes] |
| rs73293460 | 1.00[AFR][1000 genomes] |
| rs73293467 | 1.00[AFR][1000 genomes] |
| rs73293470 | 1.00[AFR][1000 genomes] |
| rs73293472 | 1.00[AFR][1000 genomes] |
| rs73293474 | 1.00[AFR][1000 genomes] |
| rs73293482 | 1.00[AFR][1000 genomes] |
| rs73295309 | 0.86[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1021369 | chr8:106493317-107243322 | Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 13 gene(s) | inside rSNPs | diseases |
| 2 | nsv611840 | chr8:106913294-107265915 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
