Variant report

Variant	rs73293474
Chromosome Location	chr8:106960604-106960605
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs57947369	1.00[AFR][1000 genomes]
rs73293451	1.00[AFR][1000 genomes]
rs73293454	0.85[AFR][1000 genomes]
rs73293457	1.00[AFR][1000 genomes]
rs73293460	1.00[AFR][1000 genomes]
rs73293467	1.00[AFR][1000 genomes]
rs73293470	1.00[AFR][1000 genomes]
rs73293472	1.00[AFR][1000 genomes]
rs73293482	1.00[AFR][1000 genomes]
rs73293502	1.00[AFR][1000 genomes]
rs73295309	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021369	chr8:106493317-107243322	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv611840	chr8:106913294-107265915	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:106955400-106967200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr8:106960600-106961000	Enhancers	Brain Hippocampus Middle	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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