Variant report

Variant	rs73297010
Chromosome Location	chr12:26397412-26397413
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:26346592..26349220-chr12:26396340..26398794,2	MCF-7	breast:
2	chr12:26396952..26399057-chr12:26429101..26431278,2	MCF-7	breast:
3	chr12:26389613..26392747-chr12:26395888..26399490,3	K562	blood:

Variant related genes	Relation type
ENSG00000123096	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10505995	0.81[AMR][1000 genomes]
rs17382507	0.81[AMR][1000 genomes]
rs73297022	0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817432	chr12:26355515-26873664	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:26393000-26398000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr12:26393000-26400200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr12:26393000-26400400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr12:26393600-26397600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr12:26393600-26398000	Weak transcription	NHEK	skin
6	chr12:26393600-26398200	Weak transcription	Brain Angular Gyrus	brain
7	chr12:26393800-26397800	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr12:26393800-26398600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr12:26393800-26398800	Weak transcription	Colonic Mucosa	Colon
10	chr12:26394000-26397600	Weak transcription	Small Intestine	intestine
11	chr12:26394000-26397800	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr12:26394000-26398000	Weak transcription	Brain Hippocampus Middle	brain
13	chr12:26394000-26398200	Weak transcription	Brain Cingulate Gyrus	brain
14	chr12:26394000-26398400	Weak transcription	Brain Anterior Caudate	brain
15	chr12:26394000-26404600	Weak transcription	Pancreas	Pancrea
16	chr12:26394200-26397600	Weak transcription	Brain Substantia Nigra	brain
17	chr12:26395000-26397800	Weak transcription	Rectal Mucosa Donor 29	rectum
18	chr12:26395600-26400400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr12:26396000-26401000	Enhancers	Stomach Mucosa	stomach
20	chr12:26396200-26398200	Weak transcription	Duodenum Mucosa	Duodenum
21	chr12:26396400-26398200	Weak transcription	Placenta	Placenta
22	chr12:26396400-26398400	Weak transcription	Fetal Intestine Large	intestine
23	chr12:26396400-26398800	Weak transcription	Fetal Intestine Small	intestine
24	chr12:26396600-26398800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr12:26397000-26398800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr12:26397000-26401000	Enhancers	HMEC	breast
27	chr12:26397200-26397800	Weak transcription	Rectal Mucosa Donor 31	rectum
28	chr12:26397200-26398200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
29	chr12:26397400-26398400	Enhancers	Primary monocytes fromperipheralblood	blood

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