Variant report

Variant	rs73297022
Chromosome Location	chr12:26404612-26404613
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10505995	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11502726	0.82[EUR][1000 genomes]
rs17382507	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs73297010	0.82[AMR][1000 genomes]
rs73299007	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817432	chr12:26355515-26873664	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:26401000-26404800	Weak transcription	Stomach Mucosa	stomach
2	chr12:26402800-26408400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr12:26403600-26404800	Enhancers	HUVEC	blood vessel
4	chr12:26403800-26406600	Enhancers	Osteobl	bone
5	chr12:26404000-26405000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr12:26404400-26405200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr12:26404400-26405400	Enhancers	Ovary	ovary
8	chr12:26404600-26404800	Enhancers	Pancreas	Pancrea
9	chr12:26404600-26405000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr12:26404600-26405200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr12:26404600-26406400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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