Variant report

Variant	rs73299007
Chromosome Location	chr12:26432656-26432657
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:26427065..26429381-chr12:26431183..26432797,2	MCF-7	breast:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10505995	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17382507	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73297022	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817432	chr12:26355515-26873664	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:26421800-26435800	Weak transcription	Gastric	stomach
2	chr12:26424600-26433400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr12:26424800-26447000	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr12:26428200-26433400	Weak transcription	Primary B cells from cord blood	blood
5	chr12:26428400-26434000	Weak transcription	Fetal Muscle Trunk	muscle
6	chr12:26428600-26433800	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr12:26429000-26433800	Weak transcription	Brain Substantia Nigra	brain
8	chr12:26429000-26433800	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr12:26429000-26434000	Weak transcription	Ovary	ovary
10	chr12:26429000-26435400	Weak transcription	GM12878-XiMat	blood
11	chr12:26429000-26440600	Weak transcription	Right Atrium	heart
12	chr12:26429200-26432800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr12:26429200-26434000	Weak transcription	Brain Anterior Caudate	brain
14	chr12:26429200-26434000	Weak transcription	Lung	lung
15	chr12:26429200-26434200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr12:26429200-26434200	Weak transcription	Adipose Nuclei	Adipose
17	chr12:26429800-26433000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr12:26430000-26433800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr12:26430000-26437400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr12:26430200-26438400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr12:26431200-26434000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr12:26431400-26433400	Enhancers	Stomach Mucosa	stomach
23	chr12:26431400-26433600	Enhancers	Duodenum Mucosa	Duodenum
24	chr12:26431400-26434000	Weak transcription	NHDF-Ad	bronchial
25	chr12:26431600-26433800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr12:26431600-26434200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr12:26431600-26434200	Weak transcription	HSMMtube	muscle
28	chr12:26431800-26433800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr12:26431800-26435600	Weak transcription	Fetal Thymus	thymus
30	chr12:26431800-26436200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr12:26432000-26433000	Enhancers	Pancreas	Pancrea
32	chr12:26432000-26433000	Enhancers	Spleen	Spleen
33	chr12:26432000-26433200	Enhancers	K562	blood
34	chr12:26432200-26433400	Weak transcription	Psoas Muscle	Psoas
35	chr12:26432200-26433800	Weak transcription	Skeletal Muscle Female	skeletal muscle
36	chr12:26432200-26434000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr12:26432400-26438200	Weak transcription	Brain Hippocampus Middle	brain
38	chr12:26432600-26432800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
39	chr12:26432600-26434600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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