Variant report
| Variant | rs73297287 |
|---|---|
| Chromosome Location | chr8:91253783-91253784 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:5)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:5 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr8:91185537..91188064-chr8:91252722..91255551,2 | K562 | blood: | |
| 2 | chr8:91235807..91240613-chr8:91250967..91255237,5 | K562 | blood: | |
| 3 | chr8:91250919..91253356-chr8:91253452..91256356,4 | K562 | blood: | |
| 4 | chr8:91078574..91081154-chr8:91252454..91254106,2 | K562 | blood: | |
| 5 | chr8:91022020..91023548-chr8:91252293..91254281,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:16)
| rs_ID | r2[population] |
|---|---|
| rs1476549 | 1.00[AMR][1000 genomes] |
| rs55983994 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs58324688 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs58393960 | 0.81[AFR][1000 genomes] |
| rs60217143 | 0.81[AFR][1000 genomes] |
| rs60471107 | 0.81[AFR][1000 genomes] |
| rs61699874 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73295228 | 0.81[AFR][1000 genomes] |
| rs73295248 | 0.81[AFR][1000 genomes] |
| rs73295256 | 0.81[AFR][1000 genomes] |
| rs73295280 | 0.81[AFR][1000 genomes] |
| rs73297291 | 1.00[AMR][1000 genomes] |
| rs73297292 | 1.00[AMR][1000 genomes] |
| rs73299203 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73308782 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73310725 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2758164 | chr8:91000786-91329669 | Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 18 gene(s) | inside rSNPs | diseases |
| 2 | esv2759628 | chr8:91000786-91329669 | Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 18 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr8:91252600-91256600 | Weak transcription | K562 | blood |
