Variant report

Variant	rs58393960
Chromosome Location	chr8:91210295-91210296
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:91209392..91211904-chr8:91213092..91216334,3	K562	blood:
2	chr8:91208689..91211552-chr8:91212511..91216609,5	K562	blood:
3	chr8:91210166..91212699-chr8:91233871..91237591,3	K562	blood:
4	chr8:91208757..91210892-chr8:91218226..91220582,2	K562	blood:
5	chr8:91208628..91210312-chr8:91239266..91240795,2	K562	blood:
6	chr8:91197950..91200166-chr8:91210110..91212853,2	K562	blood:
7	chr8:91208888..91210489-chr8:91226599..91229382,2	K562	blood:
8	chr8:91207044..91210489-chr8:91227882..91229931,3	K562	blood:
9	chr8:91204870..91208091-chr8:91210126..91212391,3	K562	blood:
10	chr8:91209932..91211490-chr8:91214820..91216543,2	MCF-7	breast:

No data

No data

No data

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs60217143	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60471107	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7004700	1.00[AMR][1000 genomes]
rs73295228	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73295248	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73295256	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73295280	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73295282	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73297267	1.00[AMR][1000 genomes]
rs73297274	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73297287	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758164	chr8:91000786-91329669	Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	esv2759628	chr8:91000786-91329669	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	esv2757281	chr8:91090821-91235335	Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv470225	chr8:91113616-91229254	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases
5	nsv891184	chr8:91114698-91222654	Active TSS Genic enhancers Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	10 gene(s)	inside rSNPs	diseases
6	esv35109	chr8:91150726-91226940	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
7	nsv818643	chr8:91153308-91212148	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers	Chromatin interactive region	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:91209800-91210400	Flanking Active TSS	K562	blood
2	chr8:91210200-91211400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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dbSNP/dbVar ID: rs12345 /nsv7879
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