Variant report

Variant	rs73298216
Chromosome Location	chr7:3656756-3656757
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:3650446..3652502-chr7:3655244..3656781,2	MCF-7	breast:

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs57519297	1.00[AMR][1000 genomes]
rs59181604	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60368813	1.00[AMR][1000 genomes]
rs73296236	1.00[AMR][1000 genomes]
rs73296244	1.00[AMR][1000 genomes]
rs73296252	1.00[AMR][1000 genomes]
rs73296254	1.00[AMR][1000 genomes]
rs73296260	1.00[AMR][1000 genomes]
rs73296264	1.00[AMR][1000 genomes]
rs73296271	1.00[AMR][1000 genomes]
rs73296276	1.00[AMR][1000 genomes]
rs73296288	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73296291	1.00[AMR][1000 genomes]
rs73296295	1.00[AMR][1000 genomes]
rs73296301	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73298214	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73298217	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73298227	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73298232	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73298246	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73298256	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73298257	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73300219	1.00[AMR][1000 genomes]
rs73300296	1.00[AMR][1000 genomes]
rs73302222	1.00[AMR][1000 genomes]
rs73302264	1.00[AMR][1000 genomes]
rs73302284	1.00[AMR][1000 genomes]
rs73302285	1.00[AMR][1000 genomes]
rs73302287	1.00[AMR][1000 genomes]
rs73302292	1.00[AMR][1000 genomes]
rs73303045	1.00[AMR][1000 genomes]
rs73303052	1.00[AMR][1000 genomes]
rs73303062	1.00[AMR][1000 genomes]
rs73303065	1.00[AMR][1000 genomes]
rs73303071	1.00[AMR][1000 genomes]
rs73309930	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018173	chr7:3258989-3879848	Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv538660	chr7:3258989-3879848	Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1016555	chr7:3298478-3872512	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv538661	chr7:3298478-3872512	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv916071	chr7:3423207-3697428	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv830888	chr7:3577214-3776276	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	esv1792280	chr7:3592290-3668229	Enhancers Active TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv948390	chr7:3609821-3734421	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv1033415	chr7:3616095-3753563	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	nsv538680	chr7:3616095-3753563	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
11	nsv1016930	chr7:3627295-3705057	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
12	nsv530553	chr7:3629504-3736851	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
13	nsv1016270	chr7:3650882-3753563	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
14	nsv538681	chr7:3650882-3753563	Strong transcription Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
15	nsv605928	chr7:3654580-3665040	Weak transcription Strong transcription ZNF genes & repeats Enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:3645200-3660400	Weak transcription	HepG2	liver
2	chr7:3646400-3657200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr7:3649600-3673400	Weak transcription	Pancreas	Pancrea
4	chr7:3654400-3667600	Weak transcription	Colon Smooth Muscle	Colon
5	chr7:3655400-3662000	Weak transcription	Fetal Lung	lung
6	chr7:3656200-3657400	Weak transcription	Aorta	Aorta
7	chr7:3656200-3660000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr7:3656600-3656800	Enhancers	Pancreatic Islets	Pancreatic Islet

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