Variant report

Variant	rs73302552
Chromosome Location	chr17:37689772-37689773
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:37616553..37618810-chr17:37688201..37690122,2	K562	blood:
2	chr17:37688421..37690653-chr17:37698157..37699744,2	K562	blood:
3	chr17:37678954..37687273-chr17:37688248..37694064,9	K562	blood:
4	chr17:37681483..37683694-chr17:37687598..37690522,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000167258	Chromatin interaction

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs16968748	0.81[EUR][1000 genomes]
rs17634758	1.00[EUR][1000 genomes]
rs55703686	0.81[EUR][1000 genomes]
rs55844295	1.00[EUR][1000 genomes]
rs57418114	0.83[EUR][1000 genomes]
rs57489670	0.81[EUR][1000 genomes]
rs58225361	0.81[EUR][1000 genomes]
rs58467767	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58850789	1.00[EUR][1000 genomes]
rs59329213	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59743097	0.81[EUR][1000 genomes]
rs60333790	1.00[EUR][1000 genomes]
rs60506770	1.00[EUR][1000 genomes]
rs61749873	1.00[EUR][1000 genomes]
rs7226073	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73291305	0.81[EUR][1000 genomes]
rs73291310	0.81[EUR][1000 genomes]
rs73294950	1.00[EUR][1000 genomes]
rs73294997	1.00[EUR][1000 genomes]
rs73298796	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73300732	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73302557	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73302588	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73302596	0.88[AFR][1000 genomes]
rs73302601	1.00[EUR][1000 genomes]
rs73304305	0.83[EUR][1000 genomes]
rs73985210	1.00[EUR][1000 genomes]
rs9972899	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932024	chr17:37192290-37850932	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	92 gene(s)	inside rSNPs	diseases
2	nsv1057655	chr17:37333956-37732451	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	72 gene(s)	inside rSNPs	diseases
3	nsv1066033	chr17:37333956-37795617	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	78 gene(s)	inside rSNPs	diseases
4	nsv543340	chr17:37333956-37795617	Flanking Active TSS Strong transcription Enhancers Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	78 gene(s)	inside rSNPs	diseases
5	nsv1061951	chr17:37442228-37770903	Bivalent Enhancer Strong transcription Weak transcription Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
6	nsv543341	chr17:37442228-37770903	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
7	esv1825702	chr17:37487168-37876767	Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	53 gene(s)	inside rSNPs	diseases
8	nsv532712	chr17:37521822-37768345	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
9	nsv1063848	chr17:37575622-37707592	Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:37624000-37690600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr17:37626600-37690600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr17:37640400-37691000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr17:37646400-37689800	Strong transcription	HUES6 Cell Line	embryonic stem cell
5	chr17:37646600-37690200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr17:37646800-37690000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr17:37655600-37689800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr17:37660600-37704400	Weak transcription	Stomach Mucosa	stomach
9	chr17:37665200-37690000	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
10	chr17:37675400-37704000	Weak transcription	Right Atrium	heart
11	chr17:37680200-37692000	Strong transcription	HSMM	muscle
12	chr17:37681200-37692600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr17:37683000-37694600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
14	chr17:37683000-37695200	Weak transcription	Fetal Heart	heart
15	chr17:37683400-37694200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
16	chr17:37683800-37695200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
17	chr17:37683800-37703000	Weak transcription	Fetal Brain Male	brain
18	chr17:37683800-37719400	Weak transcription	Psoas Muscle	Psoas
19	chr17:37685600-37702600	Weak transcription	Brain Inferior Temporal Lobe	brain
20	chr17:37686000-37696400	Weak transcription	Primary B cells from cord blood	blood
21	chr17:37687200-37694200	Weak transcription	Primary hematopoietic stem cells	blood
22	chr17:37687400-37690600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
23	chr17:37687400-37702800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr17:37687400-37704000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr17:37687400-37706600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr17:37687600-37692200	Weak transcription	Pancreatic Islets	Pancreatic Islet
27	chr17:37687600-37695800	Weak transcription	Lung	lung
28	chr17:37687800-37691000	Weak transcription	Fetal Intestine Small	intestine
29	chr17:37687800-37699600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr17:37687800-37699600	Weak transcription	Pancreas	Pancrea
31	chr17:37687800-37699800	Weak transcription	Ovary	ovary
32	chr17:37687800-37701000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr17:37687800-37701200	Weak transcription	Aorta	Aorta
34	chr17:37687800-37701200	Weak transcription	Left Ventricle	heart
35	chr17:37687800-37701400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr17:37687800-37701400	Weak transcription	Colon Smooth Muscle	Colon
37	chr17:37687800-37702800	Weak transcription	Right Ventricle	heart
38	chr17:37687800-37702800	Weak transcription	Sigmoid Colon	Sigmoid Colon
39	chr17:37687800-37702800	Weak transcription	Spleen	Spleen
40	chr17:37687800-37703600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
41	chr17:37687800-37705000	Weak transcription	NHLF	lung
42	chr17:37687800-37709600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
43	chr17:37687800-37729800	Weak transcription	Small Intestine	intestine
44	chr17:37688000-37694800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
45	chr17:37688000-37699600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
46	chr17:37688000-37701000	Weak transcription	Brain Anterior Caudate	brain
47	chr17:37688000-37701000	Weak transcription	Skeletal Muscle Male	skeletal muscle
48	chr17:37688000-37702800	Weak transcription	Brain Germinal Matrix	brain
49	chr17:37688000-37707400	Weak transcription	Rectal Mucosa Donor 29	rectum
50	chr17:37688200-37694600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--

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