Variant report

Variant	rs7330321
Chromosome Location	chr13:111035556-111035557
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs1999014	1.00[AFR][1000 genomes]
rs2391826	1.00[AFR][1000 genomes]
rs9521727	0.89[AFR][1000 genomes]
rs9559784	0.94[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038914	chr13:110860219-111190104	Weak transcription Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv1046423	chr13:110936104-111286607	Weak transcription Strong transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:57 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:111015600-111036600	Weak transcription	Fetal Intestine Small	intestine
2	chr13:111024400-111040200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr13:111024800-111039400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr13:111031000-111038400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr13:111031000-111039800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr13:111031600-111040200	Weak transcription	Aorta	Aorta
7	chr13:111031800-111035800	Enhancers	HUVEC	blood vessel
8	chr13:111032600-111036600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr13:111032600-111037600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr13:111032600-111037600	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr13:111032600-111040200	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr13:111032800-111036800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr13:111033200-111037000	Weak transcription	Stomach Smooth Muscle	stomach
14	chr13:111033200-111039600	Weak transcription	Rectal Smooth Muscle	rectum
15	chr13:111033200-111039800	Weak transcription	Fetal Lung	lung
16	chr13:111033200-111040200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr13:111033400-111035600	Weak transcription	Fetal Heart	heart
18	chr13:111033400-111037000	Weak transcription	HUES6 Cell Line	embryonic stem cell
19	chr13:111033400-111037800	Weak transcription	Skeletal Muscle Female	skeletal muscle
20	chr13:111033600-111036000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr13:111033600-111036200	Weak transcription	Right Ventricle	heart
22	chr13:111033600-111036400	Weak transcription	Placenta	Placenta
23	chr13:111033600-111037000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr13:111033600-111037600	Weak transcription	Pancreas	Pancrea
25	chr13:111033600-111039800	Weak transcription	Spleen	Spleen
26	chr13:111033800-111036000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr13:111033800-111036000	Weak transcription	Esophagus	oesophagus
28	chr13:111033800-111036600	Weak transcription	Left Ventricle	heart
29	chr13:111033800-111036800	Weak transcription	Fetal Stomach	stomach
30	chr13:111033800-111037000	Weak transcription	Lung	lung
31	chr13:111033800-111039800	Weak transcription	Right Atrium	heart
32	chr13:111034000-111036000	Weak transcription	Fetal Muscle Trunk	muscle
33	chr13:111034000-111041200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
34	chr13:111034200-111036000	Weak transcription	Fetal Muscle Leg	muscle
35	chr13:111034200-111036200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr13:111034200-111037000	Weak transcription	Gastric	stomach
37	chr13:111034200-111037200	Weak transcription	Cortex derived primary cultured neurospheres	brain
38	chr13:111034200-111039800	Weak transcription	Ovary	ovary
39	chr13:111034400-111036800	Weak transcription	Skeletal Muscle Male	skeletal muscle
40	chr13:111034400-111037000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
41	chr13:111034400-111039600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr13:111034400-111039600	Weak transcription	Adipose Nuclei	Adipose
43	chr13:111034600-111035600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr13:111034600-111035800	Enhancers	Muscle Satellite Cultured Cells	--
45	chr13:111034600-111036600	Weak transcription	Colon Smooth Muscle	Colon
46	chr13:111034600-111039600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
47	chr13:111034600-111039600	Weak transcription	NHDF-Ad	bronchial
48	chr13:111034800-111036000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
49	chr13:111034800-111036200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
50	chr13:111034800-111039800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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