Variant report

Variant	rs9559784
Chromosome Location	chr13:111031753-111031754
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1999014	1.00[YRI][hapmap];0.94[AFR][1000 genomes]
rs2391826	1.00[YRI][hapmap];0.94[AFR][1000 genomes]
rs4773172	1.00[YRI][hapmap]
rs7330321	0.94[AFR][1000 genomes]
rs9521727	0.94[AFR][1000 genomes]
rs9559778	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038914	chr13:110860219-111190104	Weak transcription Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv1046423	chr13:110936104-111286607	Weak transcription Strong transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:111011000-111032000	Weak transcription	Gastric	stomach
2	chr13:111011000-111032400	Weak transcription	NHEK	skin
3	chr13:111015600-111036600	Weak transcription	Fetal Intestine Small	intestine
4	chr13:111019600-111034000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr13:111021800-111033400	Enhancers	Fetal Heart	heart
6	chr13:111022800-111032600	Enhancers	Colon Smooth Muscle	Colon
7	chr13:111023000-111033200	Enhancers	Rectal Smooth Muscle	rectum
8	chr13:111024400-111032200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr13:111024400-111040200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr13:111024800-111039400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr13:111025400-111032000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr13:111026400-111033000	Enhancers	Skeletal Muscle Male	skeletal muscle
13	chr13:111027600-111031800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr13:111028400-111032600	Enhancers	Duodenum Smooth Muscle	Duodenum
15	chr13:111028400-111034600	Enhancers	NHDF-Ad	bronchial
16	chr13:111028800-111031800	Weak transcription	HUVEC	blood vessel
17	chr13:111029000-111033200	Enhancers	NH-A	brain
18	chr13:111029000-111033600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr13:111029000-111033800	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr13:111029400-111034200	Genic enhancers	Osteobl	bone
21	chr13:111030000-111033000	Weak transcription	Spleen	Spleen
22	chr13:111030400-111032000	Weak transcription	HSMM	muscle
23	chr13:111030400-111033200	Enhancers	HUES64 Cell Line	embryonic stem cell
24	chr13:111030600-111031800	Weak transcription	Cortex derived primary cultured neurospheres	brain
25	chr13:111030600-111031800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr13:111030600-111032000	Enhancers	ES-I3 Cell Line	embryonic stem cell
27	chr13:111030600-111032000	Weak transcription	HSMMtube	muscle
28	chr13:111030600-111034200	Enhancers	Ovary	ovary
29	chr13:111030800-111032000	Weak transcription	Muscle Satellite Cultured Cells	--
30	chr13:111030800-111032000	Genic enhancers	Stomach Smooth Muscle	stomach
31	chr13:111030800-111032200	Weak transcription	Fetal Lung	lung
32	chr13:111031000-111032200	Enhancers	iPS-18 Cell Line	embryonic stem cell
33	chr13:111031000-111032600	Enhancers	H9 Cell Line	embryonic stem cell
34	chr13:111031000-111033400	Enhancers	HUES6 Cell Line	embryonic stem cell
35	chr13:111031000-111033400	Enhancers	Skeletal Muscle Female	skeletal muscle
36	chr13:111031000-111033600	Genic enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
37	chr13:111031000-111033600	Enhancers	Right Ventricle	heart
38	chr13:111031000-111033800	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr13:111031000-111033800	Enhancers	Right Atrium	heart
40	chr13:111031000-111034000	Genic enhancers	Fetal Muscle Trunk	muscle
41	chr13:111031000-111034400	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chr13:111031000-111038400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr13:111031000-111039800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr13:111031200-111031800	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
45	chr13:111031200-111032200	Enhancers	HUES48 Cell Line	embryonic stem cell
46	chr13:111031200-111032200	Genic enhancers	Lung	lung
47	chr13:111031200-111032400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
48	chr13:111031200-111032400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
49	chr13:111031200-111032400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
50	chr13:111031200-111032600	Genic enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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