Variant report

Variant	rs73303481
Chromosome Location	chr5:145682419-145682420
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs35870798	0.85[AFR][1000 genomes]
rs56393547	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57605364	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57650885	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58281516	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58640165	0.81[AFR][1000 genomes]
rs59545810	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6580412	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6886046	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73303448	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73303451	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73317823	0.83[AFR][1000 genomes]
rs73317824	0.83[AFR][1000 genomes]
rs73317840	0.87[AFR][1000 genomes]
rs73317848	0.87[AFR][1000 genomes]
rs73317879	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73319927	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73793869	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73793896	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428128	chr5:145503978-145682880	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv462478	chr5:145622472-145687295	Genic enhancers Strong transcription Weak transcription Bivalent Enhancer Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
3	nsv599937	chr5:145622472-145687295	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:145680800-145682800	Enhancers	HSMMtube	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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