Variant report
| Variant | rs73306864 |
|---|---|
| Chromosome Location | chr12:50115838-50115839 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:3)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:3 , 50 per page) page:
1
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000257570 | Chromatin interaction |
| ENSG00000161791 | Chromatin interaction |
| ENSG00000139644 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:26)
| rs_ID | r2[population] |
|---|---|
| rs12300376 | 1.00[EUR][1000 genomes] |
| rs12300919 | 1.00[EUR][1000 genomes] |
| rs12300962 | 1.00[EUR][1000 genomes] |
| rs12306951 | 1.00[EUR][1000 genomes] |
| rs12316175 | 1.00[EUR][1000 genomes] |
| rs1317263 | 1.00[EUR][1000 genomes] |
| rs17119738 | 1.00[EUR][1000 genomes] |
| rs17123724 | 1.00[EUR][1000 genomes] |
| rs17123729 | 1.00[EUR][1000 genomes] |
| rs17123778 | 1.00[EUR][1000 genomes] |
| rs17123787 | 1.00[EUR][1000 genomes] |
| rs57046047 | 0.91[AFR][1000 genomes] |
| rs57625108 | 0.88[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs58039341 | 0.91[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs61438877 | 1.00[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73305101 | 1.00[EUR][1000 genomes] |
| rs73306844 | 0.96[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73306846 | 0.96[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73306865 | 1.00[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73306875 | 0.96[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73306891 | 0.91[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73309004 | 0.96[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73309010 | 0.88[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73309013 | 0.91[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73309017 | 0.88[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73309026 | 0.88[AFR][1000 genomes];1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1045327 | chr12:49975040-50551375 | Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 170 gene(s) | inside rSNPs | diseases |
| 2 | nsv541490 | chr12:49975040-50551375 | Weak transcription Transcr. at gene 5' and 3' Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 170 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
