Variant report
| Variant | rs73314023 |
|---|---|
| Chromosome Location | chr12:62452018-62452019 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:30)
| rs_ID | r2[population] |
|---|---|
| rs10506434 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1121705 | 0.86[ASN][1000 genomes] |
| rs11609846 | 0.85[ASN][1000 genomes] |
| rs11832494 | 0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs11836443 | 0.85[ASN][1000 genomes] |
| rs11836487 | 0.90[ASN][1000 genomes] |
| rs12831463 | 0.90[ASN][1000 genomes] |
| rs1373454 | 0.90[ASN][1000 genomes] |
| rs1440723 | 0.90[ASN][1000 genomes] |
| rs1440724 | 0.90[ASN][1000 genomes] |
| rs17125609 | 0.86[ASN][1000 genomes] |
| rs17125631 | 0.86[ASN][1000 genomes] |
| rs17654373 | 0.90[ASN][1000 genomes] |
| rs17705406 | 0.90[ASN][1000 genomes] |
| rs34008431 | 0.90[ASN][1000 genomes] |
| rs56085119 | 0.84[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs56279780 | 0.90[ASN][1000 genomes] |
| rs7314952 | 0.86[ASN][1000 genomes] |
| rs9668399 | 0.90[ASN][1000 genomes] |
| rs9668407 | 0.90[ASN][1000 genomes] |
| rs9668420 | 0.90[ASN][1000 genomes] |
| rs9668428 | 0.90[ASN][1000 genomes] |
| rs9669003 | 0.90[ASN][1000 genomes] |
| rs9669020 | 0.90[ASN][1000 genomes] |
| rs9669351 | 0.90[ASN][1000 genomes] |
| rs9669481 | 0.87[ASN][1000 genomes] |
| rs9669783 | 0.90[ASN][1000 genomes] |
| rs9669794 | 0.90[ASN][1000 genomes] |
| rs9739051 | 0.90[ASN][1000 genomes] |
| rs9739059 | 0.90[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1039741 | chr12:62046850-62491052 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 2 | nsv832435 | chr12:62407000-62601835 | Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 3 | nsv975607 | chr12:62450308-62459569 | Enhancers Weak transcription | n/a | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr12:62448000-62458800 | Weak transcription | Primary hematopoietic stem cells G-CSF-mobilized Male | -- |
