Variant report

Variant	rs10506434
Chromosome Location	chr12:62439782-62439783
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs1121705	0.86[ASN][1000 genomes]
rs11609846	0.85[ASN][1000 genomes]
rs11832494	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11833386	1.00[JPT][hapmap]
rs11836443	0.85[ASN][1000 genomes]
rs11836487	0.90[ASN][1000 genomes]
rs12305044	1.00[JPT][hapmap]
rs12831463	0.90[ASN][1000 genomes]
rs1373454	0.90[ASN][1000 genomes]
rs1440723	0.82[CHB][hapmap];0.90[ASN][1000 genomes]
rs1440724	0.81[CHD][hapmap];0.90[ASN][1000 genomes]
rs17125609	0.86[ASN][1000 genomes]
rs17125631	0.86[ASN][1000 genomes]
rs17654373	0.90[ASN][1000 genomes]
rs17657200	1.00[JPT][hapmap]
rs17657299	1.00[JPT][hapmap]
rs17705406	0.82[CHB][hapmap];0.90[ASN][1000 genomes]
rs17713979	1.00[JPT][hapmap]
rs34008431	0.90[ASN][1000 genomes]
rs56085119	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56279780	0.90[ASN][1000 genomes]
rs7135641	1.00[JPT][hapmap]
rs7314952	0.86[ASN][1000 genomes]
rs73314023	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9668399	0.90[ASN][1000 genomes]
rs9668407	0.82[CHB][hapmap];0.81[CHD][hapmap];0.90[ASN][1000 genomes]
rs9668420	0.82[CHB][hapmap];0.90[ASN][1000 genomes]
rs9668428	0.82[CHB][hapmap];0.90[ASN][1000 genomes]
rs9669003	0.90[ASN][1000 genomes]
rs9669020	0.82[CHB][hapmap];0.90[ASN][1000 genomes]
rs9669351	0.90[ASN][1000 genomes]
rs9669481	0.87[ASN][1000 genomes]
rs9669783	0.90[ASN][1000 genomes]
rs9669794	0.82[CHB][hapmap];0.81[CHD][hapmap];0.90[ASN][1000 genomes]
rs9739051	0.82[CHB][hapmap];0.90[ASN][1000 genomes]
rs9739059	0.90[ASN][1000 genomes]
rs9739152	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039741	chr12:62046850-62491052	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv832435	chr12:62407000-62601835	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:62438600-62440000	Enhancers	Fetal Stomach	stomach
2	chr12:62439000-62439800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr12:62439200-62439800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr12:62439200-62439800	Enhancers	Fetal Kidney	kidney
5	chr12:62439400-62440200	Enhancers	Ovary	ovary
6	chr12:62439600-62439800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr12:62439600-62440000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr12:62439600-62440200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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