Variant report

Variant	rs17713979
Chromosome Location	chr12:62501261-62501262
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10506434	1.00[JPT][hapmap]
rs11832494	1.00[JPT][hapmap]
rs11833386	1.00[JPT][hapmap]
rs12305044	1.00[JPT][hapmap]
rs17657200	1.00[ASW][hapmap];1.00[JPT][hapmap]
rs17657299	1.00[JPT][hapmap]
rs17714169	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9739152	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832435	chr12:62407000-62601835	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:62500800-62501400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
2	chr12:62501000-62501600	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr12:62501000-62501600	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr12:62501000-62501600	Enhancers	iPS-20b Cell Line	embryonic stem cell
5	chr12:62501200-62501400	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr12:62501200-62501600	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr12:62501200-62502200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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