Variant report

Variant	rs7135641
Chromosome Location	chr12:62276472-62276473
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10506434	1.00[JPT][hapmap]
rs10877754	0.86[YRI][hapmap];0.81[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs10877755	0.89[ASW][hapmap];0.96[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes]
rs11174208	1.00[YRI][hapmap];0.98[AFR][1000 genomes]
rs11832494	1.00[JPT][hapmap]
rs12305044	1.00[JPT][hapmap]
rs12307176	0.83[YRI][hapmap]
rs12313392	1.00[YRI][hapmap];0.92[AFR][1000 genomes]
rs12314756	1.00[YRI][hapmap];0.98[AFR][1000 genomes]
rs7134845	1.00[ASW][hapmap];1.00[LWK][hapmap];0.96[MKK][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7135878	0.89[ASW][hapmap];1.00[LWK][hapmap];0.95[MKK][hapmap];0.91[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039741	chr12:62046850-62491052	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:62274200-62282000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links