Variant report

Variant	rs73315373
Chromosome Location	chr8:119490545-119490546
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs3897876	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4131683	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58139037	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60773930	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60786064	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73315306	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73315332	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73315346	1.00[AMR][1000 genomes]
rs73315353	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73315356	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73315362	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73315371	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7816941	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7817492	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7835770	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032681	chr8:119153316-119609948	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv539737	chr8:119153316-119609948	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv831443	chr8:119390590-119590662	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:119488200-119490800	Enhancers	Brain Hippocampus Middle	brain
2	chr8:119488600-119493600	Weak transcription	Primary hematopoietic stem cells	blood
3	chr8:119488600-119493600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr8:119488600-119493800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr8:119489400-119492200	Weak transcription	Adipose Nuclei	Adipose
6	chr8:119489400-119492400	Weak transcription	Liver	Liver
7	chr8:119489800-119499600	Weak transcription	Brain Angular Gyrus	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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