Variant report

Variant	rs3897876
Chromosome Location	chr8:119486452-119486453
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs4131683	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58139037	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59768431	0.85[AFR][1000 genomes]
rs60773930	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60786064	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6985310	0.85[AFR][1000 genomes]
rs7003981	0.85[AFR][1000 genomes]
rs73313493	0.85[AFR][1000 genomes]
rs73313495	0.85[AFR][1000 genomes]
rs73315306	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73315327	0.85[AFR][1000 genomes]
rs73315332	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73315346	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73315353	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73315356	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73315362	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73315371	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73315373	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7816941	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7817492	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7835770	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032681	chr8:119153316-119609948	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv539737	chr8:119153316-119609948	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv831443	chr8:119390590-119590662	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:119480800-119488400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr8:119481600-119488000	Weak transcription	Brain Substantia Nigra	brain
3	chr8:119485400-119488400	Weak transcription	Brain Cingulate Gyrus	brain
4	chr8:119485600-119488200	Weak transcription	Brain Hippocampus Middle	brain
5	chr8:119485600-119488200	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr8:119486000-119488400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr8:119486200-119488800	Weak transcription	Brain Angular Gyrus	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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