Variant report

Variant	rs73315682
Chromosome Location	chr12:62556411-62556412
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs59663650	1.00[EUR][1000 genomes]
rs7134026	1.00[EUR][1000 genomes]
rs73315608	1.00[EUR][1000 genomes]
rs73315670	1.00[EUR][1000 genomes]
rs73315685	1.00[EUR][1000 genomes]
rs73315696	1.00[EUR][1000 genomes]
rs73317650	1.00[EUR][1000 genomes]
rs73319549	1.00[EUR][1000 genomes]
rs73319579	1.00[EUR][1000 genomes]
rs73319581	1.00[EUR][1000 genomes]
rs73321560	1.00[EUR][1000 genomes]
rs73321575	1.00[EUR][1000 genomes]
rs73321578	1.00[EUR][1000 genomes]
rs9739442	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832435	chr12:62407000-62601835	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:62552600-62557600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr12:62553000-62560200	Weak transcription	Adipose Nuclei	Adipose
3	chr12:62554000-62557200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr12:62554600-62557200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr12:62554600-62561800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr12:62555200-62557400	Enhancers	Primary T cells from cord blood	blood
7	chr12:62555800-62556600	Enhancers	Primary T helper naive cells from peripheral blood	blood
8	chr12:62555800-62556800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
9	chr12:62555800-62556800	Enhancers	Primary T helper cells fromperipheralblood	blood
10	chr12:62556400-62557400	Weak transcription	Primary T helper cells PMA-I stimulated	--
11	chr12:62556400-62557400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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