Variant report
| Variant | rs73315685 |
|---|---|
| Chromosome Location | chr12:62562313-62562314 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:4)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:4 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr12:62551164..62553377-chr12:62561402..62563915,3 | K562 | blood: | |
| 2 | chr12:62556973..62559240-chr12:62561586..62564343,2 | K562 | blood: | |
| 3 | chr12:62562223..62565206-chr12:62652566..62655530,2 | MCF-7 | breast: | |
| 4 | chr12:62560174..62563656-chr12:62564334..62567575,4 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000135655 | Chromatin interaction |
| ENSG00000198673 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:17)
| rs_ID | r2[population] |
|---|---|
| rs17126025 | 0.89[AFR][1000 genomes] |
| rs59663650 | 1.00[EUR][1000 genomes] |
| rs7134026 | 1.00[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73315608 | 1.00[EUR][1000 genomes] |
| rs73315670 | 1.00[EUR][1000 genomes] |
| rs73315682 | 1.00[EUR][1000 genomes] |
| rs73315696 | 1.00[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73317650 | 1.00[EUR][1000 genomes] |
| rs73319549 | 1.00[EUR][1000 genomes] |
| rs73319579 | 1.00[EUR][1000 genomes] |
| rs73319581 | 1.00[EUR][1000 genomes] |
| rs73321560 | 1.00[EUR][1000 genomes] |
| rs73321575 | 1.00[EUR][1000 genomes] |
| rs73321578 | 1.00[EUR][1000 genomes] |
| rs73321591 | 1.00[EUR][1000 genomes] |
| rs7963835 | 0.89[AFR][1000 genomes] |
| rs9739442 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv832435 | chr12:62407000-62601835 | Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr12:62561800-62562400 | Enhancers | Primary hematopoietic stem cells G-CSF-mobilized Male | -- |
