Variant report

Variant	rs17126025
Chromosome Location	chr12:62608873-62608874
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs17125877	0.89[AFR][1000 genomes]
rs17125897	0.89[AFR][1000 genomes]
rs17125909	0.89[AFR][1000 genomes]
rs7134026	0.89[AFR][1000 genomes]
rs73315685	0.89[AFR][1000 genomes]
rs73315696	0.89[AFR][1000 genomes]
rs7963835	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3330997	chr12:62608716-62609058	Enhancers Flanking Active TSS Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:62593200-62609000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr12:62602200-62614200	Weak transcription	Psoas Muscle	Psoas
3	chr12:62604200-62612400	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr12:62607600-62610600	Enhancers	Hela-S3	cervix
5	chr12:62607600-62611400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
6	chr12:62607800-62611600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
7	chr12:62608200-62609000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr12:62608200-62609400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
9	chr12:62608200-62610200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
10	chr12:62608200-62610600	Enhancers	Primary hematopoietic stem cells	blood
11	chr12:62608200-62610600	Enhancers	Primary T helper cells fromperipheralblood	blood
12	chr12:62608200-62611600	Enhancers	Primary T cells from cord blood	blood
13	chr12:62608400-62610400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr12:62608400-62610800	Enhancers	Primary T helper cells PMA-I stimulated	--
15	chr12:62608400-62611000	Enhancers	Primary T helper naive cells from peripheral blood	blood
16	chr12:62608600-62609200	Enhancers	K562	blood
17	chr12:62608600-62609800	Weak transcription	Primary T cells fromperipheralblood	blood
18	chr12:62608800-62609200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr12:62608800-62609200	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
20	chr12:62608800-62609200	Flanking Active TSS	Primary B cells from cord blood	blood
21	chr12:62608800-62609200	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
22	chr12:62608800-62609200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
23	chr12:62608800-62609200	Enhancers	NHEK	skin
24	chr12:62608800-62609800	Enhancers	HMEC	breast
25	chr12:62608800-62610400	Enhancers	Primary T killer memory cells from peripheral blood	blood
26	chr12:62608800-62611200	Weak transcription	Placenta	Placenta

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