Variant report

Variant	rs17125877
Chromosome Location	chr12:62495573-62495574
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs17125680	0.90[AFR][1000 genomes]
rs17125897	1.00[AFR][1000 genomes]
rs17125908	0.90[AFR][1000 genomes]
rs17125909	1.00[AFR][1000 genomes]
rs17126025	0.89[AFR][1000 genomes]
rs2884814	0.90[AFR][1000 genomes]
rs7963835	0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832435	chr12:62407000-62601835	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:62492200-62495600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr12:62493400-62497000	Weak transcription	Pancreas	Pancrea
3	chr12:62495400-62496200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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