Variant report

Variant	rs73320089
Chromosome Location	chr7:18929408-18929409
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs59272803	1.00[AFR][1000 genomes]
rs73312699	1.00[AFR][1000 genomes]
rs73320008	1.00[AFR][1000 genomes]
rs73320015	1.00[AFR][1000 genomes]
rs73320023	1.00[AFR][1000 genomes]
rs73320036	1.00[AFR][1000 genomes]
rs73320039	1.00[AFR][1000 genomes]
rs73320060	1.00[AFR][1000 genomes]
rs73320062	1.00[AFR][1000 genomes]
rs73320063	1.00[AFR][1000 genomes]
rs73320065	1.00[AFR][1000 genomes]
rs73320093	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498112	chr7:18677922-18991946	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv887813	chr7:18720135-18995552	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv523497	chr7:18896011-18959381	Weak transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Active TSS	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv2756248	chr7:18911960-18977760	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv1030062	chr7:18915874-18943409	Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:18903000-18940000	Weak transcription	Aorta	Aorta
2	chr7:18928800-18930000	Enhancers	HUVEC	blood vessel
3	chr7:18928800-18931200	Enhancers	Fetal Heart	heart
4	chr7:18929200-18929800	Enhancers	Left Ventricle	heart
5	chr7:18929200-18930000	Enhancers	HMEC	breast
6	chr7:18929200-18930200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr7:18929200-18931400	Enhancers	NHDF-Ad	bronchial
8	chr7:18929200-18931600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr7:18929400-18929600	Enhancers	Fetal Stomach	stomach
10	chr7:18929400-18930000	Enhancers	Dnd41	blood
11	chr7:18929400-18930000	Enhancers	Osteobl	bone
12	chr7:18929400-18930200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr7:18929400-18930800	Weak transcription	Adipose Nuclei	Adipose
14	chr7:18929400-18931000	Enhancers	Muscle Satellite Cultured Cells	--
15	chr7:18929400-18931200	Enhancers	NHLF	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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