Variant report

Variant	rs73323921
Chromosome Location	chr10:93432408-93432409
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	GATA2	chr10:93431822-93432654	HUVEC	blood vessel:	n/a	chr10:93432217-93432227 chr10:93432200-93432214
2	FOSL2	chr10:93431881-93432483	SK-N-SH	brain:	n/a	chr10:93432161-93432173 chr10:93432349-93432363
3	GATA3	chr10:93431580-93432644	SK-N-SH	brain:	n/a	chr10:93432217-93432227
4	PBX3	chr10:93431703-93432546	SK-N-SH	brain:	n/a	n/a
5	YY1	chr10:93431886-93432487	SK-N-SH_RA	brain:	n/a	n/a
6	BHLHE40	chr10:93431952-93432425	K562	blood:	n/a	n/a
7	SIN3AK20	chr10:93431016-93432569	MCF-7	breast:	n/a	n/a
8	POLR2A	chr10:93432201-93432435	K562	blood:	n/a	n/a
9	GATA3	chr10:93431140-93432484	MCF-7	breast:	n/a	chr10:93432217-93432227
10	SIN3AK20	chr10:93431906-93432452	SK-N-SH	brain:	n/a	n/a
11	GATA2	chr10:93432001-93432410	SH-SY5Y	brain:	n/a	chr10:93432217-93432227 chr10:93432200-93432214
12	ELF1	chr10:93431782-93432517	MCF-7	breast:	n/a	chr10:93432213-93432226
13	YY1	chr10:93431733-93432473	ECC-1	luminal epithelium:	n/a	n/a
14	KAP1	chr10:93431914-93432481	U2OS	brain:	n/a	n/a
15	JUN	chr10:93431691-93432799	K562	blood:	n/a	chr10:93432161-93432173 chr10:93432349-93432363
16	TEAD4	chr10:93431890-93432430	K562	blood:	n/a	n/a
17	ELF1	chr10:93431986-93432433	MCF-7	breast:	n/a	chr10:93432213-93432226
18	TAF1	chr10:93431952-93432437	PFSK-1	brain:	n/a	n/a
19	MAX	chr10:93431772-93432416	SK-N-SH	brain:	n/a	n/a
20	TAF1	chr10:93431920-93432420	SK-N-SH	brain:	n/a	n/a
21	NFIC	chr10:93431673-93432524	SK-N-SH	brain:	n/a	n/a
22	MYC	chr10:93432093-93432501	K562	blood:	n/a	n/a
23	TEAD4	chr10:93431899-93432508	SK-N-SH	brain:	n/a	n/a
24	ELF1	chr10:93431850-93432536	SK-N-SH	brain:	n/a	chr10:93432213-93432226
25	POLR2A	chr10:93431845-93432486	SK-N-SH	brain:	n/a	n/a
26	YY1	chr10:93431718-93432434	ECC-1	luminal epithelium:	n/a	n/a
27	GATA1	chr10:93431812-93432970	K562	blood:	n/a	chr10:93432217-93432227
28	GATA3	chr10:93431809-93432562	MCF-7	breast:	n/a	chr10:93432217-93432227
29	POLR2A	chr10:93431896-93432484	PFSK-1	brain:	n/a	n/a
30	YY1	chr10:93431766-93432512	SK-N-SH	brain:	n/a	n/a
31	TCF12	chr10:93431643-93432547	SK-N-SH	brain:	n/a	n/a
32	GABPA	chr10:93431936-93432557	SK-N-SH	brain:	n/a	n/a
33	PBX3	chr10:93431687-93432455	SK-N-SH	brain:	n/a	n/a
34	TCF12	chr10:93431608-93432661	SK-N-SH	brain:	n/a	n/a
35	RCOR1	chr10:93431730-93432421	K562	blood:	n/a	n/a
36	SETDB1	chr10:93431856-93432431	U2OS	brain:	n/a	n/a
37	JUND	chr10:93431792-93432494	SK-N-SH	brain:	n/a	chr10:93432161-93432173 chr10:93432349-93432363
38	YY1	chr10:93431851-93432493	SK-N-SH_RA	brain:	n/a	n/a
39	TEAD4	chr10:93431763-93432439	ECC-1	luminal epithelium:	n/a	n/a
40	GATA3	chr10:93431660-93432606	SK-N-SH	brain:	n/a	chr10:93432217-93432227
41	STAT1	chr10:93431438-93432541	Hela-S3	cervix:	n/a	chr10:93432336-93432356 chr10:93432341-93432350 chr10:93431728-93431740 chr10:93432342-93432351 chr10:93432339-93432353 chr10:93432340-93432351
42	MAX	chr10:93431778-93432509	SK-N-SH	brain:	n/a	n/a
43	EP300	chr10:93431655-93432634	SK-N-SH	brain:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:93431074..93433600-chr10:93435217..93437331,2	MCF-7	breast:
2	chr10:93428056..93430246-chr10:93430391..93432462,3	MCF-7	breast:

Variant related genes	Relation type
GAPDHP28	TF binding region

rs_ID	r²[population]
rs56771415	0.89[AFR][1000 genomes]
rs61262247	1.00[AFR][1000 genomes]
rs73318256	0.89[AFR][1000 genomes]
rs73320137	0.89[AFR][1000 genomes]
rs73320162	0.90[AFR][1000 genomes]
rs73322069	1.00[AFR][1000 genomes]
rs73323920	1.00[AFR][1000 genomes]

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93424800-93449800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr10:93427000-93443400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr10:93427600-93448800	Weak transcription	Liver	Liver
4	chr10:93431200-93432600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr10:93431400-93432600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr10:93431400-93433200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr10:93431600-93432600	Enhancers	Dnd41	blood
8	chr10:93431600-93432800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr10:93431600-93432800	Enhancers	HUVEC	blood vessel
10	chr10:93431600-93433000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr10:93431600-93433200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr10:93431800-93432600	Enhancers	NHLF	lung
13	chr10:93431800-93432800	Enhancers	NHDF-Ad	bronchial
14	chr10:93432200-93432800	Enhancers	Muscle Satellite Cultured Cells	--
15	chr10:93432200-93432800	Enhancers	NHEK	skin
16	chr10:93432400-93432600	Enhancers	HSMM	muscle
17	chr10:93432400-93432800	Enhancers	Hela-S3	cervix
18	chr10:93432400-93433000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr10:93432400-93433200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr10:93432400-93436200	Weak transcription	Psoas Muscle	Psoas
21	chr10:93432400-93442800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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