Variant report

Variant	rs73318256
Chromosome Location	chr10:93358272-93358273
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:93353150..93355778-chr10:93356212..93359175,2	K562	blood:
2	chr10:93357183..93358744-chr10:93360434..93363194,2	MCF-7	breast:
3	chr10:93355565..93358601-chr10:93391118..93395265,4	MCF-7	breast:
4	chr10:93349706..93352465-chr10:93354064..93358504,5	K562	blood:
5	chr10:93357670..93360937-chr10:93364618..93367584,3	K562	blood:
6	chr10:93358181..93359014-chr19:54704342..54704986,2	Hela-S3	cervix:

Variant related genes	Relation type
ENSG00000119938	Chromatin interaction
ENSG00000170889	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs56771415	1.00[AFR][1000 genomes]
rs61262247	0.89[AFR][1000 genomes]
rs73320137	1.00[AFR][1000 genomes]
rs73322069	0.89[AFR][1000 genomes]
rs73323920	0.89[AFR][1000 genomes]
rs73323921	0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv19622	chr10:93305214-93361590	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:62 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93347000-93358800	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr10:93347600-93358800	Enhancers	Fetal Stomach	stomach
3	chr10:93348200-93358800	Enhancers	Fetal Intestine Small	intestine
4	chr10:93351800-93359200	Enhancers	Fetal Intestine Large	intestine
5	chr10:93353000-93360200	Enhancers	Fetal Heart	heart
6	chr10:93354600-93364800	Enhancers	Skeletal Muscle Female	skeletal muscle
7	chr10:93355600-93358600	Enhancers	Cortex derived primary cultured neurospheres	brain
8	chr10:93355600-93358600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr10:93355600-93359400	Enhancers	Muscle Satellite Cultured Cells	--
10	chr10:93355800-93358600	Enhancers	Fetal Kidney	kidney
11	chr10:93355800-93358800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr10:93355800-93358800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr10:93355800-93358800	Enhancers	Rectal Mucosa Donor 31	rectum
14	chr10:93355800-93359200	Enhancers	NHEK	skin
15	chr10:93355800-93359400	Enhancers	NHDF-Ad	bronchial
16	chr10:93355800-93361000	Enhancers	Skeletal Muscle Male	skeletal muscle
17	chr10:93356000-93358400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr10:93356000-93358600	Enhancers	Colon Smooth Muscle	Colon
19	chr10:93356000-93358800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr10:93356000-93358800	Enhancers	HSMM	muscle
21	chr10:93356000-93359200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr10:93356000-93360600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr10:93356200-93358400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr10:93356200-93358400	Enhancers	Placenta Amnion	Placenta Amnion
25	chr10:93356200-93358600	Enhancers	Stomach Smooth Muscle	stomach
26	chr10:93356200-93358800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr10:93356200-93358800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr10:93356200-93358800	Enhancers	NHLF	lung
29	chr10:93356200-93358800	Enhancers	Osteobl	bone
30	chr10:93356400-93358400	Enhancers	Brain Cingulate Gyrus	brain
31	chr10:93356400-93358800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr10:93356400-93358800	Enhancers	NH-A	brain
33	chr10:93356400-93359200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr10:93356400-93359400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr10:93356400-93359400	Enhancers	HMEC	breast
36	chr10:93356600-93358400	Enhancers	Right Atrium	heart
37	chr10:93356600-93358600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
38	chr10:93356600-93358600	Enhancers	Fetal Muscle Leg	muscle
39	chr10:93356600-93358600	Enhancers	Left Ventricle	heart
40	chr10:93356600-93358600	Enhancers	Right Ventricle	heart
41	chr10:93356800-93358400	Enhancers	Stomach Mucosa	stomach
42	chr10:93356800-93358600	Enhancers	Psoas Muscle	Psoas
43	chr10:93357000-93358800	Enhancers	HUVEC	blood vessel
44	chr10:93357200-93358400	Enhancers	Esophagus	oesophagus
45	chr10:93357200-93358400	Enhancers	Placenta	Placenta
46	chr10:93357200-93358400	Flanking Active TSS	Hela-S3	cervix
47	chr10:93357200-93358600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
48	chr10:93357400-93358400	Enhancers	Brain Anterior Caudate	brain
49	chr10:93357400-93358400	Enhancers	Duodenum Smooth Muscle	Duodenum
50	chr10:93357400-93358800	Enhancers	Aorta	Aorta

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