Variant report

Variant	rs73324025
Chromosome Location	chr8:117689803-117689804
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:117682303..117684886-chr8:117687768..117689816,2	K562	blood:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10505285	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12541272	0.83[AFR][1000 genomes]
rs12545964	0.86[AFR][1000 genomes]
rs12548586	0.85[AFR][1000 genomes]
rs1343663	0.92[AFR][1000 genomes]
rs16888614	0.90[AFR][1000 genomes]
rs16888615	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs16888619	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs16888625	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs16888629	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs16888632	0.91[AFR][1000 genomes]
rs16888650	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16888683	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16888705	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16888709	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16888721	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2366	0.93[AFR][1000 genomes]
rs4130879	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs41339048	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56998977	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs59843956	0.89[AFR][1000 genomes]
rs73322481	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530386	chr8:117509968-118391406	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	esv3425853	chr8:117689796-117692344	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:57 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:117654600-117715200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr8:117659000-117698000	Weak transcription	Hela-S3	cervix
3	chr8:117660000-117697400	Weak transcription	NHEK	skin
4	chr8:117665800-117697400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr8:117666000-117699000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr8:117667000-117699200	Weak transcription	Primary B cells from peripheral blood	blood
7	chr8:117668200-117707000	Weak transcription	Primary hematopoietic stem cells	blood
8	chr8:117670200-117707000	Weak transcription	Primary T cells fromperipheralblood	blood
9	chr8:117670600-117696800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
10	chr8:117671000-117693200	Weak transcription	Dnd41	blood
11	chr8:117671000-117696800	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr8:117671000-117717600	Weak transcription	HepG2	liver
13	chr8:117671200-117690000	Weak transcription	Fetal Intestine Large	intestine
14	chr8:117673000-117697400	Weak transcription	NH-A	brain
15	chr8:117674800-117706800	Weak transcription	Monocytes-CD14+_RO01746	blood
16	chr8:117675600-117697400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr8:117675800-117697600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr8:117677400-117699200	Weak transcription	Primary monocytes fromperipheralblood	blood
19	chr8:117678200-117697600	Weak transcription	Cortex derived primary cultured neurospheres	brain
20	chr8:117678200-117700600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
21	chr8:117678200-117705600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
22	chr8:117679000-117703200	Weak transcription	Brain Hippocampus Middle	brain
23	chr8:117681200-117698000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
24	chr8:117682800-117693400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr8:117682800-117696800	Weak transcription	HUVEC	blood vessel
26	chr8:117682800-117697400	Weak transcription	Gastric	stomach
27	chr8:117682800-117698600	Weak transcription	Sigmoid Colon	Sigmoid Colon
28	chr8:117682800-117703400	Weak transcription	Primary T cells from cord blood	blood
29	chr8:117682800-117707400	Weak transcription	Right Atrium	heart
30	chr8:117683000-117697400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
31	chr8:117683600-117696200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
32	chr8:117683600-117697400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr8:117683800-117696600	Weak transcription	Fetal Lung	lung
34	chr8:117683800-117697400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
35	chr8:117684000-117698600	Weak transcription	Fetal Stomach	stomach
36	chr8:117684000-117698800	Weak transcription	Primary T helper cells fromperipheralblood	blood
37	chr8:117684200-117700400	Weak transcription	K562	blood
38	chr8:117685000-117696400	Weak transcription	Primary T helper cells PMA-I stimulated	--
39	chr8:117685000-117697400	Weak transcription	HMEC	breast
40	chr8:117685200-117698800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr8:117685400-117707200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
42	chr8:117686200-117703200	Weak transcription	GM12878-XiMat	blood
43	chr8:117686400-117690600	Weak transcription	Fetal Muscle Trunk	muscle
44	chr8:117686600-117697400	Weak transcription	HSMM	muscle
45	chr8:117687400-117690400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
46	chr8:117687600-117697000	Weak transcription	Muscle Satellite Cultured Cells	--
47	chr8:117687800-117697200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
48	chr8:117688000-117697000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr8:117688200-117690000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
50	chr8:117688400-117690400	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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