Variant report

Variant	rs2366
Chromosome Location	chr8:117699878-117699879
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:117694246..117696754-chr8:117699804..117701447,2	K562	blood:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10505283	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs10505285	0.85[YRI][hapmap];0.92[AFR][1000 genomes]
rs12541272	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12541592	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12545964	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12547063	1.00[CEU][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12548564	1.00[CEU][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12548586	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13266314	0.85[YRI][hapmap]
rs1343663	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1436767	0.80[YRI][hapmap]
rs16888614	0.84[AFR][1000 genomes]
rs16888615	0.90[YRI][hapmap];0.84[AFR][1000 genomes]
rs16888619	0.91[YRI][hapmap];0.85[AFR][1000 genomes]
rs16888625	0.89[YRI][hapmap];0.85[AFR][1000 genomes]
rs16888629	0.80[AFR][1000 genomes]
rs16888632	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16888650	0.96[AFR][1000 genomes]
rs16888671	0.86[ASN][1000 genomes]
rs16888683	0.89[YRI][hapmap];0.92[AFR][1000 genomes]
rs16888705	0.83[YRI][hapmap];0.87[AFR][1000 genomes]
rs16888709	0.83[YRI][hapmap];0.87[AFR][1000 genomes]
rs16888721	0.85[YRI][hapmap];0.82[AFR][1000 genomes]
rs4130879	0.82[AFR][1000 genomes]
rs41339048	0.83[YRI][hapmap];0.87[AFR][1000 genomes]
rs56998977	0.86[AFR][1000 genomes]
rs59843956	0.83[AFR][1000 genomes]
rs73322481	0.85[AFR][1000 genomes]
rs73324025	0.93[AFR][1000 genomes]
rs764938	1.00[JPT][hapmap]
rs7825662	0.85[JPT][hapmap];0.85[ASN][1000 genomes]
rs7833306	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7843792	0.80[YRI][hapmap]
rs7844973	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530386	chr8:117509968-118391406	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:95 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:117654600-117715200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr8:117668200-117707000	Weak transcription	Primary hematopoietic stem cells	blood
3	chr8:117670200-117707000	Weak transcription	Primary T cells fromperipheralblood	blood
4	chr8:117671000-117717600	Weak transcription	HepG2	liver
5	chr8:117674800-117706800	Weak transcription	Monocytes-CD14+_RO01746	blood
6	chr8:117678200-117700600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr8:117678200-117705600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
8	chr8:117679000-117703200	Weak transcription	Brain Hippocampus Middle	brain
9	chr8:117682800-117703400	Weak transcription	Primary T cells from cord blood	blood
10	chr8:117682800-117707400	Weak transcription	Right Atrium	heart
11	chr8:117684200-117700400	Weak transcription	K562	blood
12	chr8:117685400-117707200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr8:117686200-117703200	Weak transcription	GM12878-XiMat	blood
14	chr8:117690000-117707000	Weak transcription	Primary B cells from cord blood	blood
15	chr8:117693400-117700000	Weak transcription	Fetal Intestine Small	intestine
16	chr8:117694600-117703200	Weak transcription	Brain Substantia Nigra	brain
17	chr8:117695600-117704400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr8:117695600-117707600	Weak transcription	Dnd41	blood
19	chr8:117696800-117700600	Enhancers	HUVEC	blood vessel
20	chr8:117697000-117701000	Enhancers	Muscle Satellite Cultured Cells	--
21	chr8:117697000-117704800	Enhancers	Primary T helper cells PMA-I stimulated	--
22	chr8:117697200-117701400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
23	chr8:117697200-117701400	Enhancers	Fetal Heart	heart
24	chr8:117697200-117701600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr8:117697200-117702400	Weak transcription	Brain Anterior Caudate	brain
26	chr8:117697400-117700000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr8:117697400-117700200	Enhancers	HSMMtube	muscle
28	chr8:117697400-117700400	Enhancers	iPS-20b Cell Line	embryonic stem cell
29	chr8:117697400-117700400	Enhancers	HSMM	muscle
30	chr8:117697400-117700600	Enhancers	Primary T helper naive cells from peripheral blood	blood
31	chr8:117697400-117700600	Enhancers	HMEC	breast
32	chr8:117697400-117701400	Enhancers	NH-A	brain
33	chr8:117697400-117701400	Enhancers	Osteobl	bone
34	chr8:117697400-117703600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr8:117697600-117700000	Enhancers	HUES6 Cell Line	embryonic stem cell
36	chr8:117697600-117700000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr8:117697800-117700600	Enhancers	iPS-18 Cell Line	embryonic stem cell
38	chr8:117698000-117700200	Enhancers	Colon Smooth Muscle	Colon
39	chr8:117698000-117700600	Enhancers	Hela-S3	cervix
40	chr8:117698000-117701400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
41	chr8:117698000-117703200	Weak transcription	Brain Cingulate Gyrus	brain
42	chr8:117698000-117711200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
43	chr8:117698200-117700200	Enhancers	NHLF	lung
44	chr8:117698200-117700400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
45	chr8:117698200-117702600	Weak transcription	Cortex derived primary cultured neurospheres	brain
46	chr8:117698200-117702800	Weak transcription	Rectal Mucosa Donor 31	rectum
47	chr8:117698200-117707400	Weak transcription	Gastric	stomach
48	chr8:117698400-117700600	Enhancers	Fetal Lung	lung
49	chr8:117698400-117702600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
50	chr8:117698400-117713400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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