Variant report

Variant	rs73324402
Chromosome Location	chr12:56800597-56800598
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11171818	0.81[AMR][1000 genomes]
rs11171819	0.81[AMR][1000 genomes]
rs11171822	0.81[AMR][1000 genomes]
rs11830379	0.81[AMR][1000 genomes]
rs12313141	0.81[AMR][1000 genomes]
rs12318887	0.81[AMR][1000 genomes]
rs12322356	0.81[AMR][1000 genomes]
rs28828444	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55650630	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55818846	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs57387549	0.81[AMR][1000 genomes]
rs59286728	0.81[AMR][1000 genomes]
rs7131916	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73324353	0.81[AMR][1000 genomes]
rs73324358	0.81[AMR][1000 genomes]
rs73324376	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73324378	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73324389	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7954200	0.81[AMR][1000 genomes]
rs7960824	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043622	chr12:56571476-56974448	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	95 gene(s)	inside rSNPs	diseases
2	nsv541500	chr12:56571476-56974448	Weak transcription Strong transcription Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	95 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:56797200-56814200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr12:56799400-56831600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr12:56799600-56805800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr12:56799600-56811000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr12:56799800-56807600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr12:56800000-56806000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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