Variant report

Variant	rs11171822
Chromosome Location	chr12:56776659-56776660
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10876883	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs10876885	1.00[EUR][1000 genomes]
rs11171818	1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11171819	1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11171823	0.96[YRI][hapmap];0.97[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs11575221	1.00[EUR][1000 genomes]
rs11575236	1.00[EUR][1000 genomes]
rs11830379	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11832580	1.00[EUR][1000 genomes]
rs11833064	0.93[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11834948	1.00[EUR][1000 genomes]
rs12305578	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs12306512	1.00[EUR][1000 genomes]
rs12311878	0.83[YRI][hapmap];0.87[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs12318887	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12322356	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17118461	1.00[EUR][1000 genomes]
rs17118590	1.00[EUR][1000 genomes]
rs1918496	1.00[EUR][1000 genomes]
rs2629445	1.00[EUR][1000 genomes]
rs28828444	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs4301822	1.00[EUR][1000 genomes]
rs55650630	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs55728562	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs55818846	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57387549	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58349500	1.00[EUR][1000 genomes]
rs59286728	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61522113	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs61733171	1.00[EUR][1000 genomes]
rs61733875	1.00[EUR][1000 genomes]
rs6581093	1.00[EUR][1000 genomes]
rs7131916	0.81[AMR][1000 genomes]
rs72478990	1.00[EUR][1000 genomes]
rs73324353	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73324358	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73324365	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs73324376	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs73324378	0.87[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs73324389	0.81[AMR][1000 genomes]
rs73324402	0.81[AMR][1000 genomes]
rs74094726	1.00[EUR][1000 genomes]
rs7954200	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7960824	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs7962107	1.00[EUR][1000 genomes]
rs7969172	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs7975405	1.00[EUR][1000 genomes]
rs7977692	1.00[EUR][1000 genomes]
rs7979812	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043622	chr12:56571476-56974448	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	95 gene(s)	inside rSNPs	diseases
2	nsv541500	chr12:56571476-56974448	Weak transcription Strong transcription Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	95 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:56770800-56780800	Weak transcription	Fetal Intestine Small	intestine
2	chr12:56776400-56779600	Weak transcription	K562	blood

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