Variant report
| Variant | rs10876883 |
|---|---|
| Chromosome Location | chr12:56760068-56760069 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:1)
- CpG islands (count:0)
- Chromatin interactive region (count:3)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:1 , 50 per page) page:
1
| No data |
(count:3 , 50 per page) page:
1
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| APOF | TF binding region |
| ENSG00000175336 | Chromatin interaction |
| ENSG00000170581 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs11171812 | 1.00[EUR][1000 genomes] |
| rs11171818 | 0.92[AFR][1000 genomes];0.91[AMR][1000 genomes] |
| rs11171819 | 0.83[AFR][1000 genomes];0.91[AMR][1000 genomes] |
| rs11171822 | 0.91[AFR][1000 genomes];0.91[AMR][1000 genomes] |
| rs11171823 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs11830379 | 0.89[AFR][1000 genomes];0.91[AMR][1000 genomes] |
| rs11833064 | 0.91[AFR][1000 genomes] |
| rs11835538 | 1.00[EUR][1000 genomes] |
| rs12305578 | 0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12311878 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12318887 | 0.89[AFR][1000 genomes];0.91[AMR][1000 genomes] |
| rs12322356 | 0.86[AFR][1000 genomes];0.91[AMR][1000 genomes] |
| rs55666835 | 1.00[EUR][1000 genomes] |
| rs55728562 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs55818846 | 0.83[AFR][1000 genomes];0.91[AMR][1000 genomes] |
| rs57387549 | 0.84[AFR][1000 genomes];0.91[AMR][1000 genomes] |
| rs59286728 | 0.92[AFR][1000 genomes];0.91[AMR][1000 genomes] |
| rs61522113 | 0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73324353 | 0.86[AFR][1000 genomes];0.91[AMR][1000 genomes] |
| rs73324358 | 0.86[AFR][1000 genomes];0.91[AMR][1000 genomes] |
| rs73324365 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7954200 | 0.84[AFR][1000 genomes];0.91[AMR][1000 genomes] |
| rs7969172 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1043622 | chr12:56571476-56974448 | Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 95 gene(s) | inside rSNPs | diseases |
| 2 | nsv541500 | chr12:56571476-56974448 | Weak transcription Strong transcription Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 95 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr12:56755600-56760400 | Weak transcription | Primary B cells from peripheral blood | blood |
| 2 | chr12:56756800-56761200 | Enhancers | HepG2 | liver |
