Variant report

Variant	rs11835538
Chromosome Location	chr12:56768538-56768539
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10876883	1.00[EUR][1000 genomes]
rs11171812	1.00[EUR][1000 genomes]
rs11171823	1.00[EUR][1000 genomes]
rs12305578	1.00[EUR][1000 genomes]
rs12311878	1.00[EUR][1000 genomes]
rs55666835	1.00[EUR][1000 genomes]
rs55728562	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs61522113	1.00[EUR][1000 genomes]
rs73324365	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7969172	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043622	chr12:56571476-56974448	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	95 gene(s)	inside rSNPs	diseases
2	nsv541500	chr12:56571476-56974448	Weak transcription Strong transcription Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	95 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:56767400-56769000	Enhancers	Primary B cells from cord blood	blood
2	chr12:56767400-56773600	Enhancers	Primary B cells from peripheral blood	blood
3	chr12:56768000-56768600	Enhancers	GM12878-XiMat	blood
4	chr12:56768000-56769200	Enhancers	Primary neutrophils fromperipheralblood	blood
5	chr12:56768200-56769400	Enhancers	Fetal Intestine Small	intestine
6	chr12:56768200-56769800	Enhancers	Monocytes-CD14+_RO01746	blood
7	chr12:56768200-56771400	Enhancers	Primary monocytes fromperipheralblood	blood
8	chr12:56768200-56771400	Enhancers	HepG2	liver
9	chr12:56768400-56769200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
10	chr12:56768400-56770000	Enhancers	Fetal Intestine Large	intestine

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links