Variant report
| Variant | rs7969172 |
|---|---|
| Chromosome Location | chr12:56764542-56764543 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
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| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000170581 | Chromatin interaction |
| ENSG00000175336 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs10876883 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs11171812 | 1.00[EUR][1000 genomes] |
| rs11171818 | 0.96[AFR][1000 genomes];0.91[AMR][1000 genomes] |
| rs11171819 | 0.87[AFR][1000 genomes];0.91[AMR][1000 genomes] |
| rs11171822 | 0.92[AFR][1000 genomes];0.91[AMR][1000 genomes] |
| rs11171823 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs11830379 | 0.91[AFR][1000 genomes];0.91[AMR][1000 genomes] |
| rs11833064 | 0.94[AFR][1000 genomes] |
| rs11835538 | 0.82[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12305578 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12311878 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12318887 | 0.91[AFR][1000 genomes];0.91[AMR][1000 genomes] |
| rs12322356 | 0.89[AFR][1000 genomes];0.91[AMR][1000 genomes] |
| rs55650630 | 0.80[AFR][1000 genomes] |
| rs55666835 | 1.00[EUR][1000 genomes] |
| rs55728562 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs55818846 | 0.85[AFR][1000 genomes];0.91[AMR][1000 genomes] |
| rs57387549 | 0.87[AFR][1000 genomes];0.91[AMR][1000 genomes] |
| rs59286728 | 0.95[AFR][1000 genomes];0.91[AMR][1000 genomes] |
| rs61522113 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73324353 | 0.83[AFR][1000 genomes];0.91[AMR][1000 genomes] |
| rs73324358 | 0.83[AFR][1000 genomes];0.91[AMR][1000 genomes] |
| rs73324365 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7954200 | 0.87[AFR][1000 genomes];0.91[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1043622 | chr12:56571476-56974448 | Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 95 gene(s) | inside rSNPs | diseases |
| 2 | nsv541500 | chr12:56571476-56974448 | Weak transcription Strong transcription Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 95 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
