Variant report

Variant	rs73325624
Chromosome Location	chr8:119359487-119359488
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs73325629	0.85[AMR][1000 genomes]
rs73325633	0.85[AMR][1000 genomes]
rs73325635	0.85[AMR][1000 genomes]
rs73325637	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv612047	chr8:118939094-119468609	Flanking Active TSS Enhancers Genic enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv1015380	chr8:118948652-119418389	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv539736	chr8:118948652-119418389	Flanking Active TSS Active TSS Weak transcription Genic enhancers Enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv1032681	chr8:119153316-119609948	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
5	nsv539737	chr8:119153316-119609948	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
6	nsv1016379	chr8:119164234-119448910	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
7	nsv831442	chr8:119181675-119390122	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:119323000-119394000	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr8:119323800-119362400	Weak transcription	GM12878-XiMat	blood
3	chr8:119330800-119361000	Weak transcription	Pancreas	Pancrea
4	chr8:119344000-119366000	Weak transcription	Gastric	stomach
5	chr8:119346000-119365800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr8:119354000-119363200	Weak transcription	Fetal Intestine Small	intestine
7	chr8:119354800-119362000	Enhancers	HUVEC	blood vessel
8	chr8:119355000-119359600	Enhancers	HepG2	liver
9	chr8:119355200-119359600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr8:119355200-119359600	Enhancers	NH-A	brain
11	chr8:119355600-119362200	Enhancers	HMEC	breast
12	chr8:119355600-119364200	Weak transcription	Pancreatic Islets	Pancreatic Islet
13	chr8:119355800-119359600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr8:119355800-119362800	Enhancers	NHEK	skin
15	chr8:119355800-119363000	Enhancers	Liver	Liver
16	chr8:119356000-119359600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr8:119357200-119361800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr8:119357800-119359600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr8:119357800-119359600	Enhancers	Right Atrium	heart
20	chr8:119357800-119362000	Weak transcription	Right Ventricle	heart
21	chr8:119358000-119364800	Weak transcription	Skeletal Muscle Male	skeletal muscle
22	chr8:119358200-119360200	Enhancers	Left Ventricle	heart
23	chr8:119358200-119362000	Weak transcription	Sigmoid Colon	Sigmoid Colon
24	chr8:119359000-119359600	Enhancers	Lung	lung
25	chr8:119359000-119363600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr8:119359000-119363800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr8:119359200-119359600	Enhancers	Aorta	Aorta
28	chr8:119359200-119359600	Enhancers	Psoas Muscle	Psoas
29	chr8:119359200-119361000	Weak transcription	Adipose Nuclei	Adipose
30	chr8:119359200-119361000	Weak transcription	Stomach Mucosa	stomach
31	chr8:119359200-119362000	Weak transcription	Spleen	Spleen
32	chr8:119359200-119363600	Weak transcription	Osteobl	bone
33	chr8:119359400-119359600	Enhancers	Brain Inferior Temporal Lobe	brain
34	chr8:119359400-119361000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr8:119359400-119361000	Weak transcription	Esophagus	oesophagus
36	chr8:119359400-119363600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr8:119359400-119363600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr8:119359400-119370000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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