Variant report

Variant	rs73325629
Chromosome Location	chr8:119362794-119362795
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:119356234..119358532-chr8:119360102..119363000,2	MCF-7	breast:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs16890941	0.83[AMR][1000 genomes]
rs73325624	0.85[AMR][1000 genomes]
rs73325633	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73325635	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73325637	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73325642	0.85[AMR][1000 genomes]
rs73325644	0.85[AMR][1000 genomes]
rs73325646	0.85[AMR][1000 genomes]
rs73325647	0.85[AMR][1000 genomes]
rs73325649	0.85[AMR][1000 genomes]
rs73325652	0.85[AMR][1000 genomes]
rs73325685	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv612047	chr8:118939094-119468609	Flanking Active TSS Enhancers Genic enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv1015380	chr8:118948652-119418389	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv539736	chr8:118948652-119418389	Flanking Active TSS Active TSS Weak transcription Genic enhancers Enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv1032681	chr8:119153316-119609948	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
5	nsv539737	chr8:119153316-119609948	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
6	nsv1016379	chr8:119164234-119448910	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
7	nsv831442	chr8:119181675-119390122	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:119323000-119394000	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr8:119344000-119366000	Weak transcription	Gastric	stomach
3	chr8:119346000-119365800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr8:119354000-119363200	Weak transcription	Fetal Intestine Small	intestine
5	chr8:119355600-119364200	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr8:119355800-119362800	Enhancers	NHEK	skin
7	chr8:119355800-119363000	Enhancers	Liver	Liver
8	chr8:119358000-119364800	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr8:119359000-119363600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr8:119359000-119363800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr8:119359200-119363600	Weak transcription	Osteobl	bone
12	chr8:119359400-119363600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr8:119359400-119363600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr8:119359400-119370000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr8:119359600-119363400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr8:119359600-119366800	Weak transcription	Aorta	Aorta
17	chr8:119359600-119372800	Weak transcription	Brain Inferior Temporal Lobe	brain
18	chr8:119359600-119398600	Weak transcription	Lung	lung
19	chr8:119361000-119362800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr8:119361000-119363000	Enhancers	Stomach Mucosa	stomach
21	chr8:119361800-119364600	Enhancers	Primary B cells from peripheral blood	blood
22	chr8:119362000-119363000	Enhancers	Spleen	Spleen
23	chr8:119362200-119363400	Weak transcription	HMEC	breast
24	chr8:119362200-119364600	Enhancers	Primary monocytes fromperipheralblood	blood
25	chr8:119362400-119362800	Enhancers	GM12878-XiMat	blood
26	chr8:119362400-119363200	Enhancers	Monocytes-CD14+_RO01746	blood
27	chr8:119362600-119363000	Weak transcription	Primary B cells from cord blood	blood
28	chr8:119362600-119363400	Weak transcription	Sigmoid Colon	Sigmoid Colon
29	chr8:119362600-119363800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr8:119362600-119395400	Weak transcription	Pancreas	Pancrea

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