Variant report

Variant	rs73328348
Chromosome Location	chr8:125056566-125056567
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10453080	1.00[ASN][1000 genomes]
rs59462187	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs59661530	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73328340	0.89[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs73328343	0.96[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73328367	0.88[ASN][1000 genomes]
rs73328371	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv6375	chr8:125056543-125087258	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:125052600-125083600	Weak transcription	Gastric	stomach
2	chr8:125053000-125060400	Weak transcription	Left Ventricle	heart
3	chr8:125053600-125058600	Enhancers	Fetal Heart	heart
4	chr8:125053800-125059800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr8:125053800-125062400	Weak transcription	Stomach Mucosa	stomach
6	chr8:125054200-125061000	Weak transcription	Fetal Stomach	stomach
7	chr8:125054400-125056600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr8:125054400-125056800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr8:125054600-125066800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr8:125055200-125057800	Enhancers	Fetal Intestine Small	intestine
11	chr8:125055400-125059400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr8:125056000-125057600	Enhancers	Fetal Intestine Large	intestine
13	chr8:125056200-125057200	Enhancers	Duodenum Mucosa	Duodenum
14	chr8:125056400-125056800	Enhancers	A549	lung
15	chr8:125056400-125057400	Enhancers	HepG2	liver
16	chr8:125056400-125060200	Enhancers	Cortex derived primary cultured neurospheres	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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