Variant report

Variant	rs73328371
Chromosome Location	chr8:125068223-125068224
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:125066380..125069161-chr8:125069847..125072884,3	MCF-7	breast:
2	chr8:125066429..125069307-chr8:125073491..125075703,2	K562	blood:
3	chr8:125067696..125069219-chr8:125081957..125084007,2	MCF-7	breast:

Extended variants
information (count: 81 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:77)

rs_ID	r²[population]
rs10087218	0.88[ASN][1000 genomes]
rs10453080	0.88[ASN][1000 genomes]
rs11985624	1.00[EUR][1000 genomes]
rs11986399	1.00[EUR][1000 genomes]
rs11988179	1.00[EUR][1000 genomes]
rs11993616	1.00[EUR][1000 genomes]
rs16899392	1.00[EUR][1000 genomes]
rs16899395	1.00[EUR][1000 genomes]
rs16899398	1.00[EUR][1000 genomes]
rs16899412	1.00[EUR][1000 genomes]
rs16899415	1.00[EUR][1000 genomes]
rs28413919	0.88[ASN][1000 genomes]
rs28733843	0.88[ASN][1000 genomes]
rs28758377	0.88[ASN][1000 genomes]
rs55665685	1.00[EUR][1000 genomes]
rs55983716	1.00[EUR][1000 genomes]
rs56187466	1.00[EUR][1000 genomes]
rs56245137	1.00[EUR][1000 genomes]
rs56293000	1.00[EUR][1000 genomes]
rs56348823	1.00[EUR][1000 genomes]
rs56813553	0.82[ASN][1000 genomes]
rs57265559	0.88[ASN][1000 genomes]
rs57874567	0.88[ASN][1000 genomes]
rs58562578	0.88[ASN][1000 genomes]
rs59462187	0.88[ASN][1000 genomes]
rs59645347	0.88[ASN][1000 genomes]
rs59661530	0.88[ASN][1000 genomes]
rs59692764	1.00[EUR][1000 genomes]
rs60486597	0.88[ASN][1000 genomes]
rs60849706	1.00[EUR][1000 genomes]
rs60939722	0.88[ASN][1000 genomes]
rs61668924	1.00[EUR][1000 genomes]
rs6470232	1.00[EUR][1000 genomes]
rs6470234	1.00[EUR][1000 genomes]
rs6980940	1.00[EUR][1000 genomes]
rs6991501	1.00[EUR][1000 genomes]
rs6999329	1.00[EUR][1000 genomes]
rs7003668	1.00[EUR][1000 genomes]
rs7003913	1.00[EUR][1000 genomes]
rs73328343	0.88[ASN][1000 genomes]
rs73328348	0.88[ASN][1000 genomes]
rs73328367	1.00[ASN][1000 genomes]
rs73328390	0.82[ASN][1000 genomes]
rs73328395	0.82[ASN][1000 genomes]
rs73328397	0.82[ASN][1000 genomes]
rs73330111	0.88[ASN][1000 genomes]
rs73330116	0.88[ASN][1000 genomes]
rs73330120	0.88[ASN][1000 genomes]
rs73330123	0.88[ASN][1000 genomes]
rs73330135	0.88[ASN][1000 genomes]
rs73330139	0.88[ASN][1000 genomes]
rs73330144	0.88[ASN][1000 genomes]
rs73330146	0.88[ASN][1000 genomes]
rs73330149	0.88[ASN][1000 genomes]
rs73330154	0.88[ASN][1000 genomes]
rs73330160	0.88[ASN][1000 genomes]
rs73330174	0.88[ASN][1000 genomes]
rs73330176	0.88[ASN][1000 genomes]
rs73330180	0.88[ASN][1000 genomes]
rs73330182	0.88[ASN][1000 genomes]
rs73332219	0.88[ASN][1000 genomes]
rs73703924	0.88[ASN][1000 genomes]
rs73703927	0.88[ASN][1000 genomes]
rs73703948	0.88[ASN][1000 genomes]
rs73703979	1.00[EUR][1000 genomes]
rs73703980	1.00[EUR][1000 genomes]
rs73703982	1.00[EUR][1000 genomes]
rs73703992	1.00[EUR][1000 genomes]
rs73703993	1.00[EUR][1000 genomes]
rs73703995	1.00[EUR][1000 genomes]
rs73703996	1.00[EUR][1000 genomes]
rs73703997	1.00[EUR][1000 genomes]
rs73703999	1.00[EUR][1000 genomes]
rs73704000	1.00[EUR][1000 genomes]
rs73704001	1.00[EUR][1000 genomes]
rs7816741	1.00[EUR][1000 genomes]
rs7817061	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv6375	chr8:125056543-125087258	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv612144	chr8:125057728-125206503	Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv1023183	chr8:125060532-125206445	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv948556	chr8:125067187-125204721	Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:125052600-125083600	Weak transcription	Gastric	stomach
2	chr8:125064400-125078600	Weak transcription	Stomach Mucosa	stomach
3	chr8:125066200-125071600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr8:125066800-125068600	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr8:125067000-125071000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr8:125067200-125068400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr8:125068000-125068400	ZNF genes & repeats	Fetal Stomach	stomach

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