Variant report

Variant	rs73330144
Chromosome Location	chr8:125089946-125089947
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10087218	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10096401	1.00[AMR][1000 genomes]
rs10106517	1.00[AMR][1000 genomes]
rs10107906	1.00[AMR][1000 genomes]
rs10108094	1.00[AMR][1000 genomes]
rs10111932	1.00[AMR][1000 genomes]
rs28413919	1.00[ASN][1000 genomes]
rs28630423	1.00[AMR][1000 genomes]
rs28665503	1.00[AMR][1000 genomes]
rs28733843	0.88[ASN][1000 genomes]
rs28758377	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs56810274	1.00[AMR][1000 genomes]
rs56813553	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs57265559	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs57874567	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs58562578	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs59645347	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs60486597	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs60939722	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6995628	1.00[AMR][1000 genomes]
rs73328367	0.88[ASN][1000 genomes]
rs73328371	0.88[ASN][1000 genomes]
rs73328390	0.94[ASN][1000 genomes]
rs73328395	0.94[ASN][1000 genomes]
rs73328397	0.94[ASN][1000 genomes]
rs73330111	1.00[ASN][1000 genomes]
rs73330116	1.00[ASN][1000 genomes]
rs73330120	1.00[ASN][1000 genomes]
rs73330123	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73330135	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73330139	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73330143	1.00[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs73330146	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73330149	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73330154	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73330160	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73330174	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73330176	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73330180	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73330182	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73332219	1.00[ASN][1000 genomes]
rs73703917	1.00[AMR][1000 genomes]
rs73703924	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73703927	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73703947	1.00[AMR][1000 genomes]
rs73703948	1.00[ASN][1000 genomes]
rs73703950	1.00[AMR][1000 genomes]
rs73703951	1.00[AMR][1000 genomes]
rs73703952	1.00[AMR][1000 genomes]
rs73703953	1.00[AMR][1000 genomes]
rs73703958	1.00[AMR][1000 genomes]
rs7817061	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7817244	1.00[AMR][1000 genomes]
rs7835106	1.00[AMR][1000 genomes]
rs7839666	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv612144	chr8:125057728-125206503	Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv1023183	chr8:125060532-125206445	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv948556	chr8:125067187-125204721	Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:125074800-125095400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr8:125076800-125121800	Weak transcription	Fetal Stomach	stomach
3	chr8:125080200-125090000	Weak transcription	Left Ventricle	heart
4	chr8:125084400-125100000	Weak transcription	Stomach Mucosa	stomach
5	chr8:125084400-125100200	Weak transcription	Gastric	stomach
6	chr8:125088000-125090200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr8:125088600-125090800	Enhancers	Fetal Intestine Small	intestine
8	chr8:125088600-125091000	Enhancers	Fetal Intestine Large	intestine
9	chr8:125089000-125090600	Enhancers	Duodenum Mucosa	Duodenum
10	chr8:125089200-125090200	Enhancers	Sigmoid Colon	Sigmoid Colon
11	chr8:125089200-125091400	Enhancers	Rectal Mucosa Donor 31	rectum
12	chr8:125089400-125090200	Enhancers	Skeletal Muscle Female	skeletal muscle
13	chr8:125089400-125090600	Enhancers	Skeletal Muscle Male	skeletal muscle
14	chr8:125089600-125093200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
15	chr8:125089800-125090200	Bivalent Enhancer	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr8:125089800-125091000	Enhancers	Rectal Mucosa Donor 29	rectum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links