Variant report
| Variant | rs73703958 |
|---|---|
| Chromosome Location | chr8:125162055-125162056 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:5)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:5 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr8:125159144..125163463-chr8:125165911..125169919,5 | MCF-7 | breast: | |
| 2 | chr8:125160213..125162131-chr8:125176706..125179341,2 | MCF-7 | breast: | |
| 3 | chr8:125156644..125159678-chr8:125159936..125163008,3 | MCF-7 | breast: | |
| 4 | chr8:125150444..125155407-chr8:125156319..125163241,13 | MCF-7 | breast: | |
| 5 | chr8:125158434..125162428-chr8:125172218..125174995,4 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000250727 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:43)
| rs_ID | r2[population] |
|---|---|
| rs10087218 | 1.00[AMR][1000 genomes] |
| rs10096401 | 1.00[AMR][1000 genomes] |
| rs10106517 | 1.00[AMR][1000 genomes] |
| rs10107906 | 1.00[AMR][1000 genomes] |
| rs10108094 | 1.00[AMR][1000 genomes] |
| rs10111932 | 1.00[AMR][1000 genomes] |
| rs28630423 | 1.00[AMR][1000 genomes] |
| rs28665503 | 1.00[AMR][1000 genomes] |
| rs56810274 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs56813553 | 1.00[AMR][1000 genomes] |
| rs57265559 | 1.00[AMR][1000 genomes] |
| rs57874567 | 1.00[AMR][1000 genomes] |
| rs58562578 | 1.00[AMR][1000 genomes] |
| rs59645347 | 1.00[AMR][1000 genomes] |
| rs60486597 | 1.00[AMR][1000 genomes] |
| rs60939722 | 1.00[AMR][1000 genomes] |
| rs6995628 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73330123 | 1.00[AMR][1000 genomes] |
| rs73330135 | 1.00[AMR][1000 genomes] |
| rs73330139 | 1.00[AMR][1000 genomes] |
| rs73330144 | 1.00[AMR][1000 genomes] |
| rs73330146 | 1.00[AMR][1000 genomes] |
| rs73330149 | 1.00[AMR][1000 genomes] |
| rs73330154 | 1.00[AMR][1000 genomes] |
| rs73330160 | 1.00[AMR][1000 genomes] |
| rs73330174 | 1.00[AMR][1000 genomes] |
| rs73330176 | 1.00[AMR][1000 genomes] |
| rs73330180 | 1.00[AMR][1000 genomes] |
| rs73330182 | 1.00[AMR][1000 genomes] |
| rs73703917 | 1.00[AMR][1000 genomes] |
| rs73703924 | 1.00[AMR][1000 genomes] |
| rs73703927 | 1.00[AMR][1000 genomes] |
| rs73703947 | 1.00[AMR][1000 genomes] |
| rs73703950 | 1.00[AMR][1000 genomes] |
| rs73703951 | 1.00[AMR][1000 genomes] |
| rs73703952 | 1.00[AMR][1000 genomes] |
| rs73703953 | 1.00[AMR][1000 genomes] |
| rs73703966 | 0.95[AFR][1000 genomes] |
| rs73703973 | 0.90[AFR][1000 genomes] |
| rs7817061 | 1.00[AMR][1000 genomes] |
| rs7817244 | 1.00[AMR][1000 genomes] |
| rs7835106 | 1.00[AMR][1000 genomes] |
| rs7839666 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv612144 | chr8:125057728-125206503 | Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 11 gene(s) | inside rSNPs | diseases |
| 2 | nsv1023183 | chr8:125060532-125206445 | Enhancers Weak transcription Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 11 gene(s) | inside rSNPs | diseases |
| 3 | nsv948556 | chr8:125067187-125204721 | Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
| 4 | nsv831452 | chr8:125099708-125259926 | Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 15 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr8:125150400-125165600 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |
| 2 | chr8:125154200-125165600 | Weak transcription | Primary hematopoietic stem cells G-CSF-mobilized Female | -- |
| 3 | chr8:125158200-125165800 | Weak transcription | Spleen | Spleen |
| 4 | chr8:125160400-125165600 | Weak transcription | H1 Derived Mesenchymal Stem Cells | ES cell derived |
| 5 | chr8:125160400-125165600 | Weak transcription | Primary hematopoietic stem cells G-CSF-mobilized Male | -- |
